DRSC/TRiP Functional Genomics Resources

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Protein Alignment Oamb and 5-HT1B

DIOPT Version :9

Sequence 1:NP_001262774.1 Gene:Oamb / 43982 FlyBaseID:FBgn0024944 Length:751 Species:Drosophila melanogaster
Sequence 2:NP_001137708.2 Gene:5-HT1B / 37191 FlyBaseID:FBgn0263116 Length:629 Species:Drosophila melanogaster


Alignment Length:660 Identity:162/660 - (24%)
Similarity:245/660 - (37%) Gaps:239/660 - (36%)


- Green bases have known domain annotations that are detailed below.


  Fly    21 LISLAVLEFINVLV-IGGNCLVIAAVFCSNKLRSVTNFFIVNLAVADLLVGLAVLPFSATWEVFK 84
            :|::||:..:.:|| |.||..||||:.....|::|.|:.:.:||||||.|...|:|..|.:|:..
  Fly    90 MIAMAVVLGLMILVTIIGNVFVIAAIILERNLQNVANYLVASLAVADLFVACLVMPLGAVYEISN 154

  Fly    85 VWIFGDLWCRIWLAVDVWMCTASILNLCAISLDRYVAVTRPVTYPSIMSTKKAKSLIAGIWVLSF 149
            .||.|...|.||.:.||..||||||:|.||:.|||..||. :.|.::.:.::...:|..:|..:.
  Fly   155 GWILGPELCDIWTSCDVLCCTASILHLVAIAADRYWTVTN-IDYNNLRTPRRVFLMIFCVWFAAL 218

  Fly   150 FICFPPLVGWKDQKAVIQPTYPKGNHTLYYTTTMSSSEDGQLGLDSIKDQGEASLPPSPPHIGNG 214
            .:...|..||||      |.|.|                      .|::|               
  Fly   219 IVSLAPQFGWKD------PDYMK----------------------RIEEQ--------------- 240

  Fly   215 NAYNPYDPGFAPIDGSAEIRIAAIDSTSTSTTATTTTTASSSSTTETEMDLDLLNAPPQNRPQTI 279
                                                                             
  Fly   241 ----------------------------------------------------------------- 240

  Fly   280 SGSCPWKCELTNDRGYVLYSALGSFYIPMFVMLFFYWRIY---------RA-------------- 321
                  .|.::.|.||.:::...:||:|:.|:||.||:||         ||              
  Fly   241 ------HCMVSQDVGYQIFATCCTFYVPLLVILFLYWKIYIIARKRIQRRAQKSFNVTLTETDCD 299

  Fly   322 -AVR-----------TTRAINQGFKTTKGSKGIGSRFEEQ-RLTLRIHRGRGSNQQD-------- 365
             |||           ..:.:..|.:|.....|.|.:.:.: |..:||..||.:|..:        
  Fly   300 SAVRELKKERSKRRAERKRLEAGERTPVDGDGTGGQLQRRTRKRMRICFGRNTNTANVVAGSEGA 364

  Fly   366 --------------------------SMHSNGSTQST--TTTLGTPSPERLSK------------ 390
                                      |.:.|.|...|  ||........|.|.            
  Fly   365 VARSMAAIAVDFASLAITREETEFSTSNYDNKSHAGTELTTVSSDADDYRTSNANEIITLSQQVA 429

  Fly   391 YATRRLHHHDKIKISVSYPSSENISELAGHGDVG-------HERRQSGNALFAVHYNGTNGREST 448
            :||:  ||.....::...|.:::|:    .|.||       .|:..||....|....|.:|..|.
  Fly   430 HATQ--HHLIASHLNAITPLAQSIA----MGGVGCLTTTTPSEKALSGAGTVAGAVAGGSGSGSG 488

  Fly   449 ESQLYRQQQQHGVASSCYLQVGKGLPELARRQSNTSEAGGSGHSRPANKKMGRRNIKAQVKRFRM 513
            |.....:.:..||.      :|..|..:|.                .::|:.:|....:.||   
  Fly   489 EEGAGTEGKNAGVG------LGGVLASIAN----------------PHQKLAKRRQLLEAKR--- 528

  Fly   514 ETKAAKTLAIIVGMFIFCWCPFFTMYIIRPFCQDC-VDPLLFSVLFWLGYCNSAVNPMIYALFSK 577
            |.|||:|||||.|.|:.||.|||.|.:....|::| :...:.|:..||||.||.:||:||.:|:.
  Fly   529 ERKAAQTLAIITGAFVICWLPFFVMALTMSLCKECEIHTAVASLFLWLGYFNSTLNPVIYTIFNP 593

  Fly   578 DFRFAFKRII 587
            :||.|||||:
  Fly   594 EFRRAFKRIL 603

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
OambNP_001262774.1 7tm_4 29..>154 CDD:304433 48/125 (38%)
7tm_1 37..>181 CDD:278431 53/143 (37%)
5-HT1BNP_001137708.2 7tm_1 107..>288 CDD:278431 71/295 (24%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR24247
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
22.010

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