DRSC/TRiP Functional Genomics Resources

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Protein Alignment Oamb and HTR1D

DIOPT Version :9

Sequence 1:NP_001262774.1 Gene:Oamb / 43982 FlyBaseID:FBgn0024944 Length:751 Species:Drosophila melanogaster
Sequence 2:NP_000855.1 Gene:HTR1D / 3352 HGNCID:5289 Length:377 Species:Homo sapiens


Alignment Length:594 Identity:145/594 - (24%)
Similarity:205/594 - (34%) Gaps:249/594 - (41%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MNETECEDLIKSVKWTEPANL----ISLA-VLEFINVLVIGGNCLVIAAVFCSNKLRSVTNFFIV 60
            :|.||     .|..| :|..|    |||| ||..|.:..:..|..|:..:..:.||.:..|:.|.
Human    20 LNATE-----TSEAW-DPRTLQALKISLAVVLSVITLATVLSNAFVLTTILLTRKLHTPANYLIG 78

  Fly    61 NLAVADLLVGLAVLPFSATWEVFKVWIFGDLWCRIWLAVDVWMCTASILNLCAISLDRYVAVTRP 125
            :||..||||.:.|:|.|..:.:...|.||.:.|.|||:.|:..||||||:||.|:||||.|:|..
Human    79 SLATTDLLVSILVMPISIAYTITHTWNFGQILCDIWLSSDITCCTASILHLCVIALDRYWAITDA 143

  Fly   126 VTYPSIMSTKKAKSLIAGIWVLSFFICFPPLVGWKDQKAVIQPTYPKGNHTLYYTTTMSSSEDGQ 190
            :.|....:...|.::||.:|.:|..|..|||. |:..||                          
Human   144 LEYSKRRTAGHAATMIAIVWAISICISIPPLF-WRQAKA-------------------------- 181

  Fly   191 LGLDSIKDQGEASLPPSPPHIGNGNAYNPYDPGFAPIDGSAEIRIAAIDSTSTSTTATTTTTASS 255
                                                                             
Human   182 ----------------------------------------------------------------- 181

  Fly   256 SSTTETEMDLDLLNAPPQNRPQTISGSCPWKCELTNDRGYVLYSALGSFYIPMFVMLFFYWRIYR 320
                :.||...|:|                    |:...|.:||..|:||||..:::..|.||||
Human   182 ----QEEMSDCLVN--------------------TSQISYTIYSTCGAFYIPSVLLIILYGRIYR 222

  Fly   321 AAVRTTRAINQGFKTTKGSKGIGSRFEEQRLTLRIHRGRGSNQQDSMHSNGSTQSTTTTLGTPSP 385
            ||  ..|.:|.       ....|.||....|.                 .||..|:..:|.:   
Human   223 AA--RNRILNP-------PSLYGKRFTTAHLI-----------------TGSAGSSLCSLNS--- 258

  Fly   386 ERLSKYATRRLHHHDKIKISVSYPSSENISELAGHGDVGHERRQSGNALFAVHYNGTNGRESTES 450
                     .||.                         ||. ..:|:.||..|..          
Human   259 ---------SLHE-------------------------GHS-HSAGSPLFFNHVK---------- 278

  Fly   451 QLYRQQQQHGVASSCYLQVGKGLPELARRQSNTSEAGGSGHSRPANKKMGRRNIKAQVKRFRMET 515
                                                     .:.|:..:.|:.|.|     ..|.
Human   279 -----------------------------------------IKLADSALERKRISA-----ARER 297

  Fly   516 KAAKTLAIIVGMFIFCWCPFFTMYIIRPFCQD-C-VDPLLFSVLFWLGYCNSAVNPMIYALFSKD 578
            ||.|.|.||:|.||.||.|||.:.::.|.|:| | :.|.||....||||.||.:||:||.:|:::
Human   298 KATKILGIILGAFIICWLPFFVVSLVLPICRDSCWIHPALFDFFTWLGYLNSLINPIIYTVFNEE 362

  Fly   579 FRFAFKRII 587
            ||.||::|:
Human   363 FRQAFQKIV 371

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
OambNP_001262774.1 7tm_4 29..>154 CDD:304433 46/124 (37%)
7tm_1 37..>181 CDD:278431 51/143 (36%)
HTR1DNP_000855.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..23 1/2 (50%)
7tmA_5-HT1B_1D 35..367 CDD:320455 135/567 (24%)
TM helix 1 40..66 CDD:320455 8/25 (32%)
TM helix 2 73..99 CDD:320455 11/25 (44%)
TM helix 3 111..141 CDD:320455 19/29 (66%)
Agonist binding. /evidence=ECO:0000250 114..123 3/8 (38%)
DRY motif, important for ligand-induced conformation changes. /evidence=ECO:0000250 135..137 1/1 (100%)
TM helix 4 153..176 CDD:320455 9/23 (39%)
TM helix 5 194..223 CDD:320455 12/28 (43%)
TM helix 6 294..324 CDD:320455 15/29 (52%)
Agonist binding. /evidence=ECO:0000250 314..318 2/3 (67%)
TM helix 7 335..360 CDD:320455 13/24 (54%)
NPxxY motif, important for ligand-induced conformation changes and signaling. /evidence=ECO:0000250 352..356 2/3 (67%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
10.910

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