DRSC/TRiP Functional Genomics Resources

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Protein Alignment Oamb and ser-3

DIOPT Version :10

Sequence 1:NP_001262774.1 Gene:Oamb / 43982 FlyBaseID:FBgn0024944 Length:751 Species:Drosophila melanogaster
Sequence 2:NP_491954.1 Gene:ser-3 / 259744 WormBaseID:WBGene00004778 Length:610 Species:Caenorhabditis elegans


Alignment Length:693 Identity:192/693 - (27%)
Similarity:282/693 - (40%) Gaps:228/693 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly    24 LAVLEFINVLVIGGNCLVIAAVFCSNKLRSVTNFFIVNLAVADLLVGLAVLPFSATWEVF-KVWI 87
            ::||..:.|:|:.||.||||||....:|||.|...|::||:||||||..:||||...||. :.||
 Worm    62 ISVLTVLVVVVVLGNALVIAAVLLRRRLRSATGLLILSLALADLLVGTVILPFSIANEVLDQYWI 126

  Fly    88 FGDLWCRIWLAVDVWMCTASILNLCAISLDRYVAVTRPVTYPSIMSTKKAKSLIAGIWVLSFFIC 152
            ||:.||.|||.:|:|||||||.||.|||:|||:|:.:|:.||.:::..:|:..:|.:|:.||.||
 Worm   127 FGETWCTIWLTLDIWMCTASIYNLVAISIDRYIAIIKPLNYPMLVTKFRARCTVAIVWIGSFLIC 191

  Fly   153 FPPLVGWKDQKAVIQPTYPKGNHTLYYTTTMSSSEDGQLGLDSIKDQGEASLPPSPPHIGNGNAY 217
            .|...                         ::|         ||||:                  
 Worm   192 SPSFF-------------------------LAS---------SIKDK------------------ 204

  Fly   218 NPYDPGFAPIDGSAEIRIAAIDSTSTSTTATTTTTASSSSTTETEMDLDLLNAPPQNRPQTISGS 282
                                                      ||                     
 Worm   205 ------------------------------------------ET--------------------- 206

  Fly   283 CPWKCELTN-DRGYVLYSALGSFYIPMFVMLFFYWRIYRAAVRTTRAINQGFKTTKGSKGIGSRF 346
             |.:|...| .|.||::||..||||||.:::|.|:|||.||...|::|..|..:...:.......
 Worm   207 -PCRCTPANAGRVYVVFSASSSFYIPMIIVVFVYFRIYVAARAATKSIYSGMMSVTAAANKKQNP 270

  Fly   347 EEQRLT------------LRIHRGRG-------SNQQDSMHSNGSTQSTT---TTLGTPSPERLS 389
            :...|.            ||:|||..       :...::...||::...|   |:..|.:..:..
 Worm   271 KSYLLNHPDVINKDSLPMLRVHRGSSVVAQITPNKPYNTCRQNGNSIDATANGTSQITAAATKAR 335

  Fly   390 KYATRRLHHHDKIKISVSYPSSENISELAGHGDVGHERRQSGNALFAVH----------YNGTN- 443
            |:|                  :::...|...|.||..::....|.|..|          .|||| 
 Worm   336 KFA------------------NDSAKTLVNRGAVGATQQAPIGARFKRHGRDSESSVDSMNGTNS 382

  Fly   444 --------GRE------------STES-----QLYRQQQQHGVASSCYLQVGKGLPELARRQSNT 483
                    |.|            ||:|     ||..|...:...|:   ....|..:.|..:|..
 Worm   383 YSATPHKSGNEELGSLIENSRSSSTDSNEKTEQLTNQTDDNFSMSN---NNNNGDEKEAFDESLL 444

  Fly   484 SEAGGSGHS---------RPANKKMGRRNIKAQVKRFRMETKAAKTLAIIVGMFIFCWCPFFTMY 539
            ||:.....|         |...||   |...|..||..:|.|||||:||:.|.|||||..|..:|
 Worm   445 SESKKKSKSLASKFNHLMRRGQKK---RTAGAYEKRLSLEIKAAKTVAIVTGCFIFCWLGFALVY 506

  Fly   540 IIRPFCQDCVDPLLFSVLFWLGYCNSAVNPMIYALFSKDFRFAFKRIICRCFCSRQSVSLKSSRR 604
            .:.....|.|    :|::|||||.|||:||:||.:|:::||..|||::.   |...:...:....
 Worm   507 GLEIKLNDVV----WSIVFWLGYLNSALNPVIYTVFNREFRICFKRLLT---CHHLNHPTQKYTN 564

  Fly   605 GSDMSAIRIRA-----RTPSITPSAAAHSFGDESELHHSEMSN 642
            .:..::..||:     |.|..       |.|:.::..:||.|:
 Worm   565 NNSYNSTAIRSTNAVNRVPQT-------SLGNYTQTQNSEKSS 600

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
OambNP_001262774.1 7tmA_Octopamine_R 21..583 CDD:320191 179/627 (29%)
TM helix 1 22..48 CDD:320191 12/23 (52%)
TM helix 2 55..81 CDD:320191 14/25 (56%)
TM helix 3 93..123 CDD:320191 21/29 (72%)
TM helix 4 135..158 CDD:320191 8/22 (36%)
TM helix 5 292..321 CDD:320191 16/28 (57%)
TM helix 6 512..542 CDD:320191 16/29 (55%)
TM helix 7 551..576 CDD:320191 13/24 (54%)
ser-3NP_491954.1 7tmA_Octopamine_R 80..>252 CDD:320191 89/287 (31%)
TM helix 2 93..119 CDD:320191 14/25 (56%)
TM helix 3 132..162 CDD:320191 21/29 (72%)
TM helix 4 174..197 CDD:320191 8/47 (17%)
TM helix 5 216..245 CDD:320191 16/28 (57%)
7tm_GPCRs <479..546 CDD:475119 34/70 (49%)
TM helix 6 485..507 CDD:410628 12/21 (57%)
TM helix 7 514..539 CDD:410628 15/28 (54%)

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