DRSC/TRiP Functional Genomics Resources

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Protein Alignment Oamb and ser-3

DIOPT Version :9

Sequence 1:NP_001262774.1 Gene:Oamb / 43982 FlyBaseID:FBgn0024944 Length:751 Species:Drosophila melanogaster
Sequence 2:NP_491954.1 Gene:ser-3 / 259744 WormBaseID:WBGene00004778 Length:610 Species:Caenorhabditis elegans


Alignment Length:693 Identity:192/693 - (27%)
Similarity:282/693 - (40%) Gaps:228/693 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly    24 LAVLEFINVLVIGGNCLVIAAVFCSNKLRSVTNFFIVNLAVADLLVGLAVLPFSATWEVF-KVWI 87
            ::||..:.|:|:.||.||||||....:|||.|...|::||:||||||..:||||...||. :.||
 Worm    62 ISVLTVLVVVVVLGNALVIAAVLLRRRLRSATGLLILSLALADLLVGTVILPFSIANEVLDQYWI 126

  Fly    88 FGDLWCRIWLAVDVWMCTASILNLCAISLDRYVAVTRPVTYPSIMSTKKAKSLIAGIWVLSFFIC 152
            ||:.||.|||.:|:|||||||.||.|||:|||:|:.:|:.||.:::..:|:..:|.:|:.||.||
 Worm   127 FGETWCTIWLTLDIWMCTASIYNLVAISIDRYIAIIKPLNYPMLVTKFRARCTVAIVWIGSFLIC 191

  Fly   153 FPPLVGWKDQKAVIQPTYPKGNHTLYYTTTMSSSEDGQLGLDSIKDQGEASLPPSPPHIGNGNAY 217
            .|...                         ::|         ||||:                  
 Worm   192 SPSFF-------------------------LAS---------SIKDK------------------ 204

  Fly   218 NPYDPGFAPIDGSAEIRIAAIDSTSTSTTATTTTTASSSSTTETEMDLDLLNAPPQNRPQTISGS 282
                                                      ||                     
 Worm   205 ------------------------------------------ET--------------------- 206

  Fly   283 CPWKCELTN-DRGYVLYSALGSFYIPMFVMLFFYWRIYRAAVRTTRAINQGFKTTKGSKGIGSRF 346
             |.:|...| .|.||::||..||||||.:::|.|:|||.||...|::|..|..:...:.......
 Worm   207 -PCRCTPANAGRVYVVFSASSSFYIPMIIVVFVYFRIYVAARAATKSIYSGMMSVTAAANKKQNP 270

  Fly   347 EEQRLT------------LRIHRGRG-------SNQQDSMHSNGSTQSTT---TTLGTPSPERLS 389
            :...|.            ||:|||..       :...::...||::...|   |:..|.:..:..
 Worm   271 KSYLLNHPDVINKDSLPMLRVHRGSSVVAQITPNKPYNTCRQNGNSIDATANGTSQITAAATKAR 335

  Fly   390 KYATRRLHHHDKIKISVSYPSSENISELAGHGDVGHERRQSGNALFAVH----------YNGTN- 443
            |:|                  :::...|...|.||..::....|.|..|          .|||| 
 Worm   336 KFA------------------NDSAKTLVNRGAVGATQQAPIGARFKRHGRDSESSVDSMNGTNS 382

  Fly   444 --------GRE------------STES-----QLYRQQQQHGVASSCYLQVGKGLPELARRQSNT 483
                    |.|            ||:|     ||..|...:...|:   ....|..:.|..:|..
 Worm   383 YSATPHKSGNEELGSLIENSRSSSTDSNEKTEQLTNQTDDNFSMSN---NNNNGDEKEAFDESLL 444

  Fly   484 SEAGGSGHS---------RPANKKMGRRNIKAQVKRFRMETKAAKTLAIIVGMFIFCWCPFFTMY 539
            ||:.....|         |...||   |...|..||..:|.|||||:||:.|.|||||..|..:|
 Worm   445 SESKKKSKSLASKFNHLMRRGQKK---RTAGAYEKRLSLEIKAAKTVAIVTGCFIFCWLGFALVY 506

  Fly   540 IIRPFCQDCVDPLLFSVLFWLGYCNSAVNPMIYALFSKDFRFAFKRIICRCFCSRQSVSLKSSRR 604
            .:.....|.|    :|::|||||.|||:||:||.:|:::||..|||::.   |...:...:....
 Worm   507 GLEIKLNDVV----WSIVFWLGYLNSALNPVIYTVFNREFRICFKRLLT---CHHLNHPTQKYTN 564

  Fly   605 GSDMSAIRIRA-----RTPSITPSAAAHSFGDESELHHSEMSN 642
            .:..::..||:     |.|..       |.|:.::..:||.|:
 Worm   565 NNSYNSTAIRSTNAVNRVPQT-------SLGNYTQTQNSEKSS 600

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
OambNP_001262774.1 7tm_4 29..>154 CDD:304433 65/125 (52%)
7tm_1 37..>181 CDD:278431 64/144 (44%)
ser-3NP_491954.1 7tmA_Octopamine_R 80..>252 CDD:320191 89/287 (31%)
TM helix 2 94..116 CDD:320191 12/21 (57%)
TM helix 3 133..155 CDD:320191 15/21 (71%)
TM helix 4 178..194 CDD:320191 6/15 (40%)
TM helix 5 217..240 CDD:320191 12/22 (55%)
7tm_GPCRs <479..546 CDD:391938 34/70 (49%)
TM helix 6 479..509 CDD:341315 16/29 (55%)
TM helix 7 514..539 CDD:341315 15/28 (54%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C160165996
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E33208_3BIX7
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 260 1.000 Inparanoid score I1913
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0016953
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 1 0.900 - - OOG6_112839
Panther 1 1.100 - - O PTHR24247
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X13746
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
109.790

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