DRSC/TRiP Functional Genomics Resources

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Protein Alignment Oamb and Htr1d

DIOPT Version :9

Sequence 1:NP_001262774.1 Gene:Oamb / 43982 FlyBaseID:FBgn0024944 Length:751 Species:Drosophila melanogaster
Sequence 2:NP_036984.1 Gene:Htr1d / 25323 RGDID:2847 Length:374 Species:Rattus norvegicus


Alignment Length: Identity:/ - (0%)
Similarity:/ - (0%) Gaps:/ - (0%)


- Green bases have known domain annotations that are detailed below.


Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
OambNP_001262774.1 7tm_4 29..>154 CDD:304433
7tm_1 37..>181 CDD:278431
Htr1dNP_036984.1 7tmA_5-HT1B_1D 32..364 CDD:320455
TM helix 1 38..62 CDD:320455
TM helix 2 71..93 CDD:320455
TM helix 3 109..131 CDD:320455
Agonist binding. /evidence=ECO:0000250 111..120
DRY motif, important for ligand-induced conformation changes. /evidence=ECO:0000250 132..134
TM helix 4 154..170 CDD:320455
TM helix 5 192..215 CDD:320455
TM helix 6 297..319 CDD:320455
Agonist binding. /evidence=ECO:0000250 311..315
TM helix 7 332..357 CDD:320455
NPxxY motif, important for ligand-induced conformation changes and signaling. /evidence=ECO:0000250 349..353
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
21.910

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