DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Oamb and Htr1b

DIOPT Version :9

Sequence 1:NP_001262774.1 Gene:Oamb / 43982 FlyBaseID:FBgn0024944 Length:751 Species:Drosophila melanogaster
Sequence 2:NP_071561.1 Gene:Htr1b / 25075 RGDID:2846 Length:386 Species:Rattus norvegicus


Alignment Length: Identity:/ - (0%)
Similarity:/ - (0%) Gaps:/ - (0%)


- Green bases have known domain annotations that are detailed below.


Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
OambNP_001262774.1 7tm_4 29..>154 CDD:304433
7tm_1 37..>181 CDD:278431
Htr1bNP_071561.1 7tmA_5-HT1B_1D 42..376 CDD:320455
TM helix 1 48..72 CDD:320455
TM helix 2 81..103 CDD:320455
TM helix 3 119..141 CDD:320455
Agonist binding. /evidence=ECO:0000250 121..130
DRY motif, important for ligand-induced conformation changes and signaling. /evidence=ECO:0000250 142..144
TM helix 4 164..180 CDD:320455
TM helix 5 202..225 CDD:320455
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 255..276
TM helix 6 309..331 CDD:320455
Agonist binding. /evidence=ECO:0000250 323..327
TM helix 7 344..369 CDD:320455
NPxxY motif, important for ligand-induced conformation changes and signaling. /evidence=ECO:0000250 361..365
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

Return to query results.
Submit another query.