DRSC/TRiP Functional Genomics Resources

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Protein Alignment Oamb and Htr5b

DIOPT Version :9

Sequence 1:NP_001262774.1 Gene:Oamb / 43982 FlyBaseID:FBgn0024944 Length:751 Species:Drosophila melanogaster
Sequence 2:NP_034613.2 Gene:Htr5b / 15564 MGIID:96284 Length:370 Species:Mus musculus


Alignment Length:578 Identity:112/578 - (19%)
Similarity:184/578 - (31%) Gaps:262/578 - (45%)


- Green bases have known domain annotations that are detailed below.


  Fly    18 PANLISLAVLEFINVLVIG---GNCLVIAAVFCSNKLRSVTNFFIVNLAVADLLVGLAVLPFSAT 79
            |.:..::.|:..:.:|::.   .|.||:..:........|.:..:.:.||:|:||...|:|.|..
Mouse    47 PFSAFTVLVVTLLVLLIVATFLWNLLVLVTILRVRAFHRVPHNLVASTAVSDVLVAALVMPLSLV 111

  Fly    80 WE--VFKVWIFGDLWCRIWLAVDVWMCTASILNLCAISLDRYVAVTRPVTYPSIMSTKKAKSLIA 142
            .|  |.:.|..|...|.:|::.||..|||||.|:.||:||||..:||.:.|.....::.:..:||
Mouse   112 SELSVGRRWQLGRSLCHVWISFDVLCCTASIWNVAAIALDRYWTITRHLQYTLRTRSRASALMIA 176

  Fly   143 GIWVLSFFICFPPLV-GWKDQKAVIQPTYPKGNHTLYYTTTMSSSEDGQLGLDSIKDQGEASLPP 206
            ..|.||..|...||: ||                                        |||    
Mouse   177 ITWALSALIALAPLLFGW----------------------------------------GEA---- 197

  Fly   207 SPPHIGNGNAYNPYDPGFAPIDGSAEIRIAAIDSTSTSTTATTTTTASSSSTTETEMDLDLLNAP 271
                         ||         |.::                                     
Mouse   198 -------------YD---------ARLQ------------------------------------- 203

  Fly   272 PQNRPQTISGSCPWKCELTNDRGYVLYSALGSFYIPMFVMLFFYWRIYRAAVRTTRAINQGFKTT 336
                          :|:::.:..|.::|..|:||:|:.|:||.||:||:||              
Mouse   204 --------------RCQVSQEPSYAVFSTCGAFYLPLAVVLFVYWKIYKAA-------------- 240

  Fly   337 KGSKGIGSRFEEQRLTLRIHRGRGSNQQDSMHSNGSTQSTTTTLGTPSPERLSKYATRRLHHHDK 401
                    :|                                           ::..||      
Mouse   241 --------KF-------------------------------------------RFGRRR------ 248

  Fly   402 IKISVSYPSSENISELAGHGDVGHERRQSGNALFAVHYNGTNGRESTESQLYRQQQQHGVASSCY 466
             :..|..|::....|.....::....|:.....|           .|....:|:|:         
Mouse   249 -RAVVPLPATTQAKEAPPESEMVFTARRRATVTF-----------QTSGDSWREQK--------- 292

  Fly   467 LQVGKGLPELARRQSNTSEAGGSGHSRPANKKMGRRNIKAQVKRFRMETKAAKTLAIIVGMFIFC 531
                                                           |.:||..:.|::|:|:.|
Mouse   293 -----------------------------------------------EKRAAMMVGILIGVFVLC 310

  Fly   532 WCPFFTMYIIRPFCQDCVDPLLFSVLFWLGYCNSAVNPMIYALFSKDFRFAFKRIICR 589
            |.|||...:|.|.|...:.|:..|:..||||.||..||:||..|:|::..|||.:..:
Mouse   311 WIPFFLTELISPLCACSLPPIWKSIFLWLGYSNSFFNPLIYTAFNKNYNNAFKSLFTK 368

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
OambNP_001262774.1 7tm_4 29..>154 CDD:304433 42/129 (33%)
7tm_1 37..>181 CDD:278431 45/146 (31%)
Htr5bNP_034613.2 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..36
7tm_1 69..351 CDD:278431 102/537 (19%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
21.910

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