DRSC/TRiP Functional Genomics Resources

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Protein Alignment Oamb and Htr1f

DIOPT Version :9

Sequence 1:NP_001262774.1 Gene:Oamb / 43982 FlyBaseID:FBgn0024944 Length:751 Species:Drosophila melanogaster
Sequence 2:NP_032336.1 Gene:Htr1f / 15557 MGIID:99842 Length:366 Species:Mus musculus


Alignment Length:586 Identity:135/586 - (23%)
Similarity:211/586 - (36%) Gaps:237/586 - (40%)


- Green bases have known domain annotations that are detailed below.


  Fly     7 EDLIKSVKWTEPANLISLAVLEFINVLVIGGNCLVIAAVFCSNKLRSVTNFFIVNLAVADLLVGL 71
            |:|:..:    |:.::....|..:.::....|.|||||:..:.||....|:.|.:|||.|.||.:
Mouse    14 EELLNRM----PSKILVSLTLSGLALMTTTINSLVIAAIIVTRKLHHPANYLICSLAVTDFLVAV 74

  Fly    72 AVLPFSATWEVFKVWIFGDLWCRIWLAVDVWMCTASILNLCAISLDRYVAVTRPVTYPSIMSTKK 136
            .|:|||..:.|.:.||.|.:.|.|||:||:..||.|||:|.||:||||.|:|..|.|....:.:.
Mouse    75 LVMPFSIVYIVRESWIMGQVLCDIWLSVDIICCTCSILHLSAIALDRYRAITDAVEYARKRTPRH 139

  Fly   137 AKSLIAGIWVLSFFICFPPLVGWKDQKAVIQPTYPKGNHTLYYTTTMSSSEDGQLGLDSIKDQGE 201
            |..:|..:||:|.||..|||. |:.|                     .:|.|.:           
Mouse   140 AGIMITIVWVISVFISMPPLF-WRHQ---------------------GTSRDDE----------- 171

  Fly   202 ASLPPSPPHIGNGNAYNPYDPGFAPIDGSAEIRIAAIDSTSTSTTATTTTTASSSSTTETEMDLD 266
                                                                             
Mouse   172 ----------------------------------------------------------------- 171

  Fly   267 LLNAPPQNRPQTISGSCPWKCELTNDR-GYVLYSALGSFYIPMFVMLFFYWRIYRAAVRTTRAIN 330
                                |.:.:|. ...:||..|:||||:.::|..|::|||||        
Mouse   172 --------------------CVIKHDHIVSTIYSTFGAFYIPLVLILILYYKIYRAA-------- 208

  Fly   331 QGFKTTKGSKGIGSRFEEQRLTLRIHRGRGSNQQDSMHSNGSTQSTTTTLGTPSPERLSKYATRR 395
                .|...|...||..::.|..::....|   :.|:....::.....:|..||.:         
Mouse   209 ----RTLYHKRQASRMIKEELNGQVFLESG---EKSIKLVSTSYMLEKSLSDPSTD--------- 257

  Fly   396 LHHHDKIKISVSYPSSENISELAGHGDVGHERRQSGNALFAVHYNGTNGRESTESQLYRQQQQHG 460
               .|:|..:|..|.||          :.||:.                        :|:|:..|
Mouse   258 ---FDRIHSTVKSPRSE----------LKHEKS------------------------WRRQKISG 285

  Fly   461 VASSCYLQVGKGLPELARRQSNTSEAGGSGHSRPANKKMGRRNIKAQVKRFRMETKAAKTLAIIV 525
            .                                                   .|.|||.||.:|:
Mouse   286 T---------------------------------------------------RERKAATTLGLIL 299

  Fly   526 GMFIFCWCPFFTMYIIRPFCQDC-VDPLLFSVLFWLGYCNSAVNPMIYALFSKDFRFAFKRII-C 588
            |.|:.||.|||...::...|:.| :...:.:.|.||||.||.:||:||.:|::||:.||:::: |
Mouse   300 GAFVICWLPFFVKELVVNVCEKCKISEEMSNFLAWLGYLNSLINPLIYTIFNEDFKKAFQKLVRC 364

  Fly   589 R 589
            |
Mouse   365 R 365

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
OambNP_001262774.1 7tm_4 29..>154 CDD:304433 53/124 (43%)
7tm_1 37..>181 CDD:278431 58/143 (41%)
Htr1fNP_032336.1 7tm_4 33..>155 CDD:304433 52/121 (43%)
7tm_1 41..347 CDD:278431 122/535 (23%)
Agonist binding. /evidence=ECO:0000250 99..108 4/8 (50%)
DRY motif, important for ligand-induced conformation changes. /evidence=ECO:0000250 120..122 1/1 (100%)
Agonist binding. /evidence=ECO:0000250 306..310 2/3 (67%)
NPxxY motif, important for ligand-induced conformation changes and signaling. /evidence=ECO:0000250 343..347 2/3 (67%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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