DRSC/TRiP Functional Genomics Resources

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Protein Alignment Oamb and drd1c

DIOPT Version :10

Sequence 1:NP_001262774.1 Gene:Oamb / 43982 FlyBaseID:FBgn0024944 Length:751 Species:Drosophila melanogaster
Sequence 2:XP_004915948.1 Gene:drd1c / 100124855 XenbaseID:XB-GENE-5919679 Length:465 Species:Xenopus tropicalis


Alignment Length:693 Identity:165/693 - (23%)
Similarity:228/693 - (32%) Gaps:328/693 - (47%)


- Green bases have known domain annotations that are detailed below.


  Fly    21 LISLAVLEFINVLVIGGNCLVIAAVFCSNKLRS-VTNFFIVNLAVADLLVGLAVLPFSATWEVFK 84
            |:||.:|.     .:.||.||..||.....||| |||||:::|||:||.|.|.|:|:.|..||..
 Frog    34 LLSLLILS-----TLLGNTLVCLAVIKFRHLRSKVTNFFVISLAVSDLFVALLVMPWKAVTEVAG 93

  Fly    85 VWIFGDLWCRIWLAVDVWMCTASILNLCAISLDRYVAVTRPVTYPSIMSTKKAKSLIAGIWVLSF 149
            .|:||| :|..|:|.|:...||||||||.||||||.|:..|..|...|:.:.|..:|...|.||.
 Frog    94 YWLFGD-FCDTWVAFDIMCSTASILNLCIISLDRYWAIASPFRYERKMTQRVAFIMIGVAWTLSI 157

  Fly   150 FICFPPL-VGWKDQKAVIQPTYPKGNHTLYYTTTMSSSEDGQLGLDSIKDQGEASLPPSPPHIGN 213
            .|.|.|: :.|...:.|                      |.:|                      
 Frog   158 LISFIPVQLSWHKSQEV----------------------DEEL---------------------- 178

  Fly   214 GNAYNPYDPGFAPIDGSAEIRIAAIDSTSTSTTATTTTTASSSSTTETEMDLDLLNAPPQNRPQT 278
             ||.|                                         .||                
 Frog   179 -NAIN-----------------------------------------HTE---------------- 185

  Fly   279 ISGSCPWKCELTNDRGYVLYSALGSFYIPMFVMLFFYWRIYRAAVRTTRAINQGFKTTKGSKGIG 343
                   .|:.:.:|.|.:.|:|.|||||:.:|:..|.||||.|....|.|:             
 Frog   186 -------NCDSSLNRTYAISSSLISFYIPVVIMIGTYTRIYRIAQTQIRRIS------------- 230

  Fly   344 SRFEEQRLTLRIHRGRGSNQQDSMHSNGSTQSTTTTLGTPSPERLSKYATRRLHHHDKIKISVSY 408
                                                    |.||..::|.               
 Frog   231 ----------------------------------------SLERAVEHAQ--------------- 240

  Fly   409 PSSENISELAGHGDVGHERRQSGNALFAVHYNGTNGRESTESQLYRQQQQHGVASSCYLQVGKGL 473
                     :||.|..:|     |:|                                       
 Frog   241 ---------SGHPDCSNE-----NSL--------------------------------------- 252

  Fly   474 PELARRQSNTSEAGGSGHSRPANKKMGRRNIKAQVKRFRMETKAAKTLAIIVGMFIFCWCPFFTM 538
                    .||                          ||.|||..|||:||:|:|:|||.|||.:
 Frog   253 --------KTS--------------------------FRKETKVLKTLSIIMGVFVFCWLPFFVL 283

  Fly   539 YIIRPFCQ-----------DCVDPLLFSVLFWLGYCNSAVNPMIYALFSKDFRFAFKRII-CRCF 591
            ..:.|||.           .||....|::..|.|:.||::||:||| |:.|||.||..|: |..|
 Frog   284 NCMIPFCHMSLPGQNEPEPPCVSETTFNIFVWFGWANSSLNPVIYA-FNADFRKAFTTILGCNRF 347

  Fly   592 CSRQSVSLKSSRRGSDMSAIRIRARTPSITPSAAAHSFGDESELHHSEMSNDPRXRSFGPSSSSQ 656
            ||..:|.                           |.:|.:|...:|    :|.. :...|.:.:.
 Frog   348 CSSNNVE---------------------------AVNFSNELVSYH----HDTTFQKDIPVTFNN 381

  Fly   657 SSLGGLRKTSLKVPVYEICHPLVMETACYSYVE--ATSDGSAS 697
            |.|..:.....:          |:|..|:..|.  :||.|:.|
 Frog   382 SHLPNVVDQDQE----------VLEGTCFDKVSVLSTSHGTRS 414

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
OambNP_001262774.1 7tmA_Octopamine_R 21..583 CDD:320191 141/574 (25%)
TM helix 1 22..48 CDD:320191 9/25 (36%)
TM helix 2 55..81 CDD:320191 14/25 (56%)
TM helix 3 93..123 CDD:320191 19/29 (66%)
TM helix 4 135..158 CDD:320191 8/23 (35%)
TM helix 5 292..321 CDD:320191 14/28 (50%)
TM helix 6 512..542 CDD:320191 17/29 (59%)
TM helix 7 551..576 CDD:320191 10/24 (42%)
drd1cXP_004915948.1 7tmA_D1-like_dopamine_R 46..338 CDD:320185 136/557 (24%)
TM helix 2 64..91 CDD:320185 14/26 (54%)
TM helix 3 101..131 CDD:320185 19/29 (66%)
TM helix 4 143..163 CDD:320185 7/19 (37%)
TM helix 5 192..222 CDD:320185 15/29 (52%)
TM helix 6 257..287 CDD:320185 17/29 (59%)
TM helix 7 307..332 CDD:320185 11/25 (44%)

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