DRSC/TRiP Functional Genomics Resources

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Protein Alignment trio and vav3b

DIOPT Version :10

Sequence 1:NP_651960.2 Gene:trio / 43974 FlyBaseID:FBgn0024277 Length:2263 Species:Drosophila melanogaster
Sequence 2:XP_073774357.1 Gene:vav3b / 559145 ZFINID:ZDB-GENE-070912-251 Length:851 Species:Danio rerio


Alignment Length:328 Identity:75/328 - (22%)
Similarity:146/328 - (44%) Gaps:58/328 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly  1908 GGVENASTNGHGRSHDNNDESHTAVSDKAAALKKRQCVFAELMSTEEAYVQDLHEIVNGYMTEIN 1972
            |.:|.      |..:::...:..||| :||.:..|.|...|:..||..|.:.|..|...:|    
Zfish   162 GDIEG------GEVYEDLMRTEAAVS-QAAEVDIRSCCLLEIKQTEAKYTETLETIEKYFM---- 215

  Fly  1973 NTNSDIPMPEDLKGGKMKLVFNNIKDIYEWHRDFFLRALRNC--QKSPADLGPLIKRSATKFALY 2035
                 ||:.:.:....:..||.||.|:.:.|:. .:..:::|  .|:..:|..:......:..||
Zfish   216 -----IPLMKFIPATDIDKVFINIPDLVKVHKG-LMGEIQDCVQNKNAENLHQIFITYKDRLLLY 274

  Fly  2036 YTYCSNKPLSEYIVSAHYQYFDSI-RQKLGHRLDLS--------------NLIIKPVQRITKYEL 2085
            ..|||:       |.:.....|.| ::|.|.||.|.              :|::.|:||:.||.|
Zfish   275 GKYCSH-------VESAISLLDFICKEKEGVRLKLEECSKRANNGKFTLRDLLVVPMQRVLKYPL 332

  Fly  2086 LIKEIIKAT----EGAGLYKEVPMLQEAYQ---QMKVVVKTVNDMMVVLRSLQDFDGEITAQGSL 2143
            |::|::|.|    |.:.|...:..:::..|   ::|..|:|:.::....||:::.:..:.:.|..
Zfish   333 LLQELVKYTNDGPEKSNLRIALDAMRDLAQYVNEVKRDVETLREIDQYQRSIENLNQSLLSYGRP 397

  Fly  2144 LMQGPMNCVVDAAQKHRELQVFLFQQIIIFADIEKTKNQYASPIFKYRSHIQLNHMQM-KELG-- 2205
            ...|.:..|.:..::.::..:|||...:|..  ::..:.|     :.:..|.|:|.:: ..|.  
Zfish   398 KGDGEVRLVSNLDKRRQDRHIFLFDAAVIIC--KRRGDNY-----EMKEVIDLSHFKITNNLADK 455

  Fly  2206 DCR 2208
            |||
Zfish   456 DCR 458

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
trioNP_651960.2 SEC14 13..152 CDD:214706
SPEC 314..>468 CDD:238103
SPEC 563..778 CDD:238103
SPEC 782..997 CDD:238103
SPEC 897..1119 CDD:238103
SPEC 1125..1226 CDD:197544
RhoGEF 1287..1455 CDD:459876
PH1_Kalirin_Trio_like 1462..1584 CDD:270060
SH3_Kalirin_1 1643..1707 CDD:212786
RhoGEF 1945..2121 CDD:459876 48/199 (24%)
PH2_Kalirin_Trio_p63RhoGEF 2130..2260 CDD:270061 15/82 (18%)
vav3bXP_073774357.1 None
Blue background indicates that the domain is not in the aligned region.

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