DRSC/TRiP Functional Genomics Resources

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Protein Alignment trio and vav2

DIOPT Version :10

Sequence 1:NP_651960.2 Gene:trio / 43974 FlyBaseID:FBgn0024277 Length:2263 Species:Drosophila melanogaster
Sequence 2:XP_017208431.2 Gene:vav2 / 556413 ZFINID:ZDB-GENE-091204-420 Length:880 Species:Danio rerio


Alignment Length:300 Identity:71/300 - (23%)
Similarity:127/300 - (42%) Gaps:60/300 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly  1941 KRQCVFAELMSTEEAYVQDLHEIVNGYMTEINNTNSDIPMPEDLKGGKMKLVFNNIKDIYEWHRD 2005
            ||.|...|:..||..|.:.|.:|...||         ||:.:.|...:|:.:|.|::||...|  
Zfish   199 KRNCCLVEIQETEAKYYKTLEDIEKNYM---------IPLKQVLTPQEMEAIFVNLEDIIRVH-- 252

  Fly  2006 F-FLRALRNCQKSPAD-LGPLIKRSATKFALYYTYCSN-----KPLSEYIVSAHYQYFDSIRQKL 2063
            | .|||:.....|..: ||.:......:..:|..|||:     |.|.|.|.:.     :.::.|:
Zfish   253 FALLRAIDLTMVSGGNGLGKIFLDFKERLLIYGQYCSHMENAQKTLDELIATR-----EDVKCKV 312

  Fly  2064 GH--------RLDLSNLIIKPVQRITKYELLIKEIIKATEGAGLYKEVPMLQEAYQQMKVVVKTV 2120
            ..        :..|.:|::.|:||:.||.||:||::..:......:::....||.|.:.:.:..|
Zfish   313 EECTMKVQEGKFKLQDLLVVPMQRVLKYHLLLKELVSHSMDRPERQQLKEALEAMQDLAMYINEV 377

  Fly  2121 NDMMVVLRSLQDFDGEI-------TAQGSLLMQGPMN-C-VVDAAQKHRELQVFLFQQIIIFADI 2176
            ......|:.:.:|...|       ...|...:.|.:. | :|:..::.|  .:|||.:::|   :
Zfish   378 KRDNETLKKISEFQSSIENLQVKLEEYGRPKIDGELKVCSIVNRTKQDR--YIFLFDKVVI---V 437

  Fly  2177 EKTKNQYASPIFKYRSHIQLNHMQMKELGDCRFQIRSTDP 2216
            .|.|.      :.|         ::||:.:......|.||
Zfish   438 CKRKG------YNY---------ELKEVIELHLYKMSDDP 462

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
trioNP_651960.2 SEC14 13..152 CDD:214706
SPEC 314..>468 CDD:238103
SPEC 563..778 CDD:238103
SPEC 782..997 CDD:238103
SPEC 897..1119 CDD:238103
SPEC 1125..1226 CDD:197544
RhoGEF 1287..1455 CDD:459876
PH1_Kalirin_Trio_like 1462..1584 CDD:270060
SH3_Kalirin_1 1643..1707 CDD:212786
RhoGEF 1945..2121 CDD:459876 47/190 (25%)
PH2_Kalirin_Trio_p63RhoGEF 2130..2260 CDD:270061 18/95 (19%)
vav2XP_017208431.2 None
Blue background indicates that the domain is not in the aligned region.

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