DRSC/TRiP Functional Genomics Resources

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Protein Alignment trio and kalrn

DIOPT Version :9

Sequence 1:NP_651960.2 Gene:trio / 43974 FlyBaseID:FBgn0024277 Length:2263 Species:Drosophila melanogaster
Sequence 2:XP_031748495.1 Gene:kalrn / 548783 XenbaseID:XB-GENE-1014006 Length:2062 Species:Xenopus tropicalis


Alignment Length: Identity:/ - (0%)
Similarity:/ - (0%) Gaps:/ - (0%)


- Green bases have known domain annotations that are detailed below.


Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
trioNP_651960.2 SEC14 13..152 CDD:214706
SPEC 314..>468 CDD:238103
SPEC 563..778 CDD:238103
SPEC 782..997 CDD:238103
SPEC 897..1119 CDD:238103
SPEC 1125..1226 CDD:197544
RhoGEF 1287..1456 CDD:279015
PH1_Kalirin_Trio_like 1462..1584 CDD:270060
PH 1495..1580 CDD:278594
SH3_Kalirin_1 1643..1707 CDD:212786
RhoGEF 1945..2122 CDD:279015
PH2_Kalirin_Trio_p63RhoGEF 2130..2260 CDD:270061
kalrnXP_031748495.1 SPEC 3..222 CDD:238103
SPEC 228..316 CDD:197544
RhoGEF 377..547 CDD:238091
PH1_Kalirin_Trio_like 554..676 CDD:270060
SH3_Kalirin_1 742..801 CDD:212786
SH3-RhoG_link 799..1019 CDD:406906
RhoGEF 1020..1189 CDD:395496
PH2_Kalirin_Trio_p63RhoGEF 1194..1328 CDD:270061
SH3_Kalirin_2 1411..1469 CDD:212787
I-set 1549..1641 CDD:400151
Ig strand A' 1557..1560 CDD:409353
Ig strand B 1564..1573 CDD:409353
Ig strand C 1578..1584 CDD:409353
Ig strand C' 1587..1589 CDD:409353
Ig strand D 1597..1602 CDD:409353
Ig strand E 1605..1613 CDD:409353
Ig strand F 1621..1628 CDD:409353
Ig strand G 1631..1641 CDD:409353
FN3 1645..1734 CDD:238020
PKc_like 1766..2013 CDD:419665
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 230 1.000 Domainoid score I2405
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 1713 1.000 Inparanoid score I69
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D4513at33208
OrthoFinder 1 1.000 - - FOG0002562
OrthoInspector 1 1.000 - - otm49408
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X1686
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
66.060

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