Sequence 1: | NP_651960.2 | Gene: | trio / 43974 | FlyBaseID: | FBgn0024277 | Length: | 2263 | Species: | Drosophila melanogaster |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | XP_003749542.2 | Gene: | Ccdc141 / 311134 | RGDID: | 1593250 | Length: | 1530 | Species: | Rattus norvegicus |
Alignment Length: | 1616 | Identity: | 297/1616 - (18%) |
---|---|---|---|
Similarity: | 528/1616 - (32%) | Gaps: | 609/1616 - (37%) |
- Green bases have known domain annotations that are detailed below.
Fly 690 STDETRLSQENLEGIERILQQYQRDQQESSVNVCLTTISQGEALLQEMRSLEYADNT-GSIAALE 753
Fly 754 ATLEKLNKQKVE--------LEELWSARKFRADLILRLRYFERDARLLSVQMEMWSEELQHA--- 807
Fly 808 DLSRDY----------QKAEQLIRMHNESVTEIQNATYEVVQQGQ---DLLQLFENAGFISMADA 859
Fly 860 THTAQA---RIEYLLDFLREREIDLEEMSEAKRAKLEQAVQLCQFQNDANQVISW----IRNGEA 917
Fly 918 MLVASFVTPNSLQEAEQLRKGHEQFQIAIEKTHTSAVQVKYRADALINANHYDPLSIDEISDDVT 982
Fly 983 KKW------QQLVTYAEE-------RHKLVTASINFYKTAEQVCSVLDSLEREYKREDDWCDGGG 1034
Fly 1035 GSDKAQAIVQLISKHQEQKEAFLKACTLARRTAETFLKYANRSQQCYQYKGNCE--GHVKSKLDK 1097
Fly 1098 LLTQENQVLDYWTLRKKSLDQCQQFVLFERSAKQAIEWIHNTGEAYLSSRSNL-VGISKEETEGL 1161
Fly 1162 LKEHNEFRSTAKETRERVKLLIQLADSLVEKGHAHASDIKQWVASVDQRYKDFS--NRMDSY--- 1221
Fly 1222 -----------CEQLEKSLGMSQQQLLLGS------DGNSSISSSSGDRH-----------SDPT 1258
Fly 1259 LE-AKLNSSNKENKEIN----------------------------------------------EE 1276
Fly 1277 KRKSARRKEFIMAELMQTERA----------------------YVNDLATCIKCFLEEFR--AGK 1317
Fly 1318 SVPSALIGQEDVIFGNIKEIHHFHQKIFLRE-LEKYETMPEDVGHCFVTWASKFDMYVHYCKNKP 1381
Fly 1382 T-----------SNNLLVQHGGSFFEELQRRLEVDH------PLPAYLIKPVQR----------- 1418
Fly 1419 -----------------ITKYQLLLKDLLSCC--EESHGEIKEGLE--------VMLNVPKKAND 1456
Fly 1457 AMHLSLL----ENCDVSVDKLGEVVLQDAFQAWDTKQIIRKGRERRVFLFELYLLFAKEVKESNV 1517
Fly 1518 VKYQFK-------------------SKLMT---TDMGITEHIE----------GDETKFAVWTGR 1550
Fly 1551 SPMLSDCR--------------------------------IVLKATSLETKQIWVKKL----REV 1579
Fly 1580 MQ---ETC------------------------FSGTSLTLPKSPAKHSGSSQRSSRDLDEQLTEN 1617
Fly 1618 DHDRCSLASFGSGNTTDSDNKLGNQEATWVVADYIATSGSNELSVSKG-----------QQVEIV 1671
Fly 1672 EPPTAGEPDFCLVRLNPQHDDAAVQE-GLVPVSVLKPPPGSHKHGSGTAANAASSAGSQKSDMQD 1735
Fly 1736 QSNRSKADALSSSTKRRGFSGRNWLPLMNRKGTDKPPSSKPLVKKPSEKNLRTPQKHAEELAEQQ 1800
Fly 1801 NQQPGASPATVLPSSQFPSSTQHPGGAGAGDYEPDEEV---GLELP-PPMKPIQEPHLIANGPPA 1861
Fly 1862 FAKDAKESSGNMAS--------PGKMDGN-------PLSEIEEIVKTTTEQHESNSRV------- 1904
Fly 1905 ----DGGGGVENASTNGHGRSHD-----NNDESHTAVSDKAAALKKRQCVFAELMS 1951 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
trio | NP_651960.2 | SEC14 | 13..152 | CDD:214706 | |
SPEC | 314..>468 | CDD:238103 | |||
SPEC | 563..778 | CDD:238103 | 21/96 (22%) | ||
SPEC | 782..997 | CDD:238103 | 54/250 (22%) | ||
SPEC | 897..1119 | CDD:238103 | 49/240 (20%) | ||
SPEC | 1125..1226 | CDD:197544 | 23/117 (20%) | ||
RhoGEF | 1287..1456 | CDD:279015 | 44/248 (18%) | ||
PH1_Kalirin_Trio_like | 1462..1584 | CDD:270060 | 27/196 (14%) | ||
PH | 1495..1580 | CDD:278594 | 20/152 (13%) | ||
SH3_Kalirin_1 | 1643..1707 | CDD:212786 | 16/75 (21%) | ||
RhoGEF | 1945..2122 | CDD:279015 | 3/7 (43%) | ||
PH2_Kalirin_Trio_p63RhoGEF | 2130..2260 | CDD:270061 | |||
Ccdc141 | XP_003749542.2 | SPEC | 132..356 | CDD:238103 | 50/240 (21%) |
SbcC | <219..804 | CDD:223496 | 119/636 (19%) | ||
SPEC | 260..458 | CDD:295325 | 45/226 (20%) | ||
I-set | 1409..1498 | CDD:254352 | 3/8 (38%) | ||
Ig | 1425..1499 | CDD:299845 | |||
Blue background indicates that the domain is not in the aligned region. |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 0 | 0.000 | Not matched by this tool. | |||
Domainoid | 0 | 0.000 | Not matched by this tool. | |||
eggNOG | 1 | 0.900 | - | - | E1_KOG4240 | |
Hieranoid | 0 | 0.000 | Not matched by this tool. | |||
Homologene | 0 | 0.000 | Not matched by this tool. | |||
Inparanoid | 0 | 0.000 | Not matched by this tool. | |||
OMA | 0 | 0.000 | Not matched by this tool. | |||
OrthoDB | 0 | 0.000 | Not matched by this tool. | |||
OrthoFinder | 0 | 0.000 | Not matched by this tool. | |||
OrthoInspector | 0 | 0.000 | Not matched by this tool. | |||
orthoMCL | 0 | 0.000 | Not matched by this tool. | |||
Panther | 0 | 0.000 | Not matched by this tool. | |||
Phylome | 1 | 0.910 | - | - | ||
SonicParanoid | 0 | 0.000 | Not matched by this tool. | |||
SwiftOrtho | 0 | 0.000 | Not matched by this tool. | |||
TreeFam | 0 | 0.000 | Not matched by this tool. | |||
2 | 1.810 |