DRSC/TRiP Functional Genomics Resources

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Protein Alignment trio and Vav2

DIOPT Version :10

Sequence 1:NP_651960.2 Gene:trio / 43974 FlyBaseID:FBgn0024277 Length:2263 Species:Drosophila melanogaster
Sequence 2:XP_038960659.1 Gene:Vav2 / 296603 RGDID:1306285 Length:873 Species:Rattus norvegicus


Alignment Length:310 Identity:73/310 - (23%)
Similarity:126/310 - (40%) Gaps:80/310 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly  1941 KRQCVFAELMSTEEAYVQDLHEIVNGYMTEINNTNSDIPMPEDLKGGKMKLVFNNIKDIYEWHRD 2005
            ||.|...|:..||..|.:.|.:|...||.         |:.:.|....|..:|.|::|:.:.|..
  Rat   193 KRSCCLLEIQETEAKYYRTLEDIEKNYMG---------PLRQVLSPVDMATIFINLEDLIKVHHS 248

  Fly  2006 FFLRALR-NCQKSPADLGPLIKRSATKFALYYTYCSNKPLSEYIVSAHYQYF---DSIRQKLGH- 2065
             ||||:. :.....:.|..:......:..:|..|||:   .|:..||..|..   |..|||:.. 
  Rat   249 -FLRAIDVSMMAGGSTLAKVFLEFKERLLIYGEYCSH---MEHAQSALNQLLASRDDFRQKVEEC 309

  Fly  2066 -------RLDLSNLIIKPVQRITKYELLIKEIIKATEGAGLYKEVPMLQEAYQQM---------- 2113
                   :..|.:|::.|:||:.||.||:||::..:...   .|...|:||.:.|          
  Rat   310 TLKVQEGKFKLQDLLVVPMQRVLKYHLLLKELLSHSADR---PERQQLKEALEAMQDLAMYINEV 371

  Fly  2114 ---KVVVKTVNDMMVVLRSLQ---------DFDGEITAQGSLLMQGPMNCVVDAAQKHRELQVFL 2166
               |..:|.:::....:.:||         ..|||:..:.          :|:..::.|.|  ||
  Rat   372 KRDKETLKKISEFQCSIENLQVKLEEFGRPKIDGELKVRS----------IVNHTKQDRYL--FL 424

  Fly  2167 FQQIIIFADIEKTKNQYASPIFKYRSHIQLNHMQMKELGDCRFQIRSTDP 2216
            |.:::|   :.|.|.      :.|         ::||:.:..|...:.||
  Rat   425 FDKVVI---VCKRKG------YSY---------ELKEVIELLFHKMTDDP 456

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
trioNP_651960.2 SEC14 13..152 CDD:214706
SPEC 314..>468 CDD:238103
SPEC 563..778 CDD:238103
SPEC 782..997 CDD:238103
SPEC 897..1119 CDD:238103
SPEC 1125..1226 CDD:197544
RhoGEF 1287..1455 CDD:459876
PH1_Kalirin_Trio_like 1462..1584 CDD:270060
SH3_Kalirin_1 1643..1707 CDD:212786
RhoGEF 1945..2121 CDD:459876 50/200 (25%)
PH2_Kalirin_Trio_p63RhoGEF 2130..2260 CDD:270061 20/96 (21%)
Vav2XP_038960659.1 CH_VAV2 2..120 CDD:409112
RhoGEF 197..369 CDD:459876 48/187 (26%)
PH_Vav 384..511 CDD:269930 20/103 (19%)
C1_VAV2 514..571 CDD:410418
SH3_VAV2_1 585..644 CDD:212913
SH2_Vav2 662..764 CDD:198269
SH3_VAV2_2 814..871 CDD:212910
Blue background indicates that the domain is not in the aligned region.

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