DRSC/TRiP Functional Genomics Resources

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Protein Alignment trio and Vav3

DIOPT Version :10

Sequence 1:NP_651960.2 Gene:trio / 43974 FlyBaseID:FBgn0024277 Length:2263 Species:Drosophila melanogaster
Sequence 2:XP_017446264.1 Gene:Vav3 / 295378 RGDID:1565941 Length:875 Species:Rattus norvegicus


Alignment Length:357 Identity:88/357 - (24%)
Similarity:147/357 - (41%) Gaps:76/357 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly  1926 DESHTAVSDKAAALKKRQCVFAELMSTEEAYVQDLHEIVNGYMTEINNTNSDIPMPEDLKGGKMK 1990
            :|:|.|.|.:...   |.|..||:..|||.|.:.|..|...:|.         |:...|...:..
  Rat   180 EEAHQAKSQENDI---RSCCLAEIRQTEEKYTETLESIEKYFMA---------PLKRFLTAAEFD 232

  Fly  1991 LVFNNIKDIYEWHRDFFLRALRN--CQKSPADLGPLIKRSATKFALYYTYCSNKPLSEYIVSAHY 2053
            .||.||.|:.:.||. .::.:.:  ..|...:|..:......:..:|..|||.  :...|.|..|
  Rat   233 SVFINIPDLVKVHRS-LMQEIHDSIVNKDDHNLYQVFINYKERLVIYGQYCSG--VESAISSLDY 294

  Fly  2054 --QYFDSIRQKL--------GHRLDLSNLIIKPVQRITKYELLIKEIIKATEGAGLYKEVPM--- 2105
              :..:.:|.||        ..:..|.:|::.|:||:.||.||::|::|.|..       ||   
  Rat   295 ISKTKEDVRLKLEECSKRANNGKFTLRDLLVVPMQRVLKYHLLLQELVKHTHD-------PMEKS 352

  Fly  2106 -LQEAYQQMKVVVKTVNDMM---VVLRSLQDFDGEI--TAQGSLLM---QGPMNCVVDAAQKH-- 2159
             |:.|...||.:.:.||::.   ..||.::.|...|  ..|..||.   ||.....:....||  
  Rat   353 NLKLALDAMKDLAQYVNEVKRDNETLREIKQFQLSIENLNQPVLLFGRPQGDGEIRITTLDKHTK 417

  Fly  2160 RELQVFLFQQIIIFADIEKTKNQYASPIFKYRSHIQLNHMQMKELGDC-RFQIR---STDPKIPE 2220
            :|..:|||...:|   :.|.|.               ::.:|||:.|. :::|.   :||.:..:
  Rat   418 QERHIFLFDLAVI---VCKRKG---------------DNYEMKEIIDLQQYKIANNPTTDKENKK 464

  Fly  2221 MT---IICQAASQ---ENYAGWRDMLNKILQQ 2246
            .:   .:.....|   |.|...:|:..|.|:|
  Rat   465 WSYGFYLIHTQGQNGLEFYCKTKDLKKKWLEQ 496

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
trioNP_651960.2 SEC14 13..152 CDD:214706
SPEC 314..>468 CDD:238103
SPEC 563..778 CDD:238103
SPEC 782..997 CDD:238103
SPEC 897..1119 CDD:238103
SPEC 1125..1226 CDD:197544
RhoGEF 1287..1455 CDD:459876
PH1_Kalirin_Trio_like 1462..1584 CDD:270060
SH3_Kalirin_1 1643..1707 CDD:212786
RhoGEF 1945..2121 CDD:459876 48/191 (25%)
PH2_Kalirin_Trio_p63RhoGEF 2130..2260 CDD:270061 30/134 (22%)
Vav3XP_017446264.1 CH_VAV3 2..118 CDD:409113
RhoGEF 193..369 CDD:238091 50/194 (26%)
PH_Vav 383..506 CDD:269930 30/132 (23%)
C1_VAV3 506..564 CDD:410419
SH3_VAV3_1 596..657 CDD:212914
SH2_Vav3 666..768 CDD:198270
SH3_VAV3_2 819..874 CDD:212911
Blue background indicates that the domain is not in the aligned region.

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