DRSC/TRiP Functional Genomics Resources

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Protein Alignment spag and Sgtb

DIOPT Version :10

Sequence 1:NP_524664.1 Gene:spag / 43958 FlyBaseID:FBgn0015544 Length:534 Species:Drosophila melanogaster
Sequence 2:NP_853660.1 Gene:Sgtb / 294708 RGDID:727976 Length:304 Species:Rattus norvegicus


Alignment Length:285 Identity:70/285 - (24%)
Similarity:128/285 - (44%) Gaps:29/285 - (10%)


- Green bases have known domain annotations that are detailed below.


  Fly    22 ENSVKDLYSWEQDIKNKEKELQKSPLSAANKDLPVRSHVQTDKSRKESPSSSAASSPTEKQDL-P 85
            |.|..|.|:.::   .:..|:....|....|..|..:|:...:...|..::|..     |.|: |
  Rat    17 EQSQMDAYTSDE---QESLEVAIQCLETVFKISPEDTHLAVSQPLTEMFTNSVC-----KNDIRP 73

  Fly    86 V-DPVAQQYKKANDIKDRGNTYVKQGEYEKAIVAYSTAIAVYPHDPIYHINRALCYLKQESFDQC 149
            : :.|.:...||:.:||.||.::|:..|..|:..|:.||.:.|::.:|:.|||....|...:...
  Rat    74 LSNSVPEDVGKADQLKDEGNNHMKEENYAAAVDCYTQAIELDPNNAVYYCNRAAAQSKLSHYTDA 138

  Fly   150 VEDCEAAIALDKLCVKAYYRRMQANESLGNNMEALKDCTTVLAIEPKNIEAKRSLARINDRLRKI 214
            ::|||.|||:|....|||.|...|..::....||:......|.::|:|...|.:|.....:||::
  Rat   139 IKDCEKAIAIDSKYSKAYGRMGLALTAMNKFEEAVTSYQKALDLDPENDSYKSNLKIAEQKLREV 203

  Fly   215 ATKSGPNFTPDRPGMIEILPIEKPAYKRSKKAMRSVPVVD----------VVSPRATI----DDS 265
            ::.:|...|.|...:     |..||:.....::...|.|.          :..|.|.:    |.|
  Rat   204 SSPTGTGLTFDMASL-----INNPAFITMAASLMQNPQVQQLMSGMMTNAIGGPAAGVGGLTDLS 263

  Fly   266 NQLRISDEDIDKIFNSNCGIIEEVK 290
            :.::...:...:|...|..:||:::
  Rat   264 SLIQAGQQFAQQIQQQNPELIEQLR 288

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
spagNP_524664.1 TPR repeat 96..124 CDD:276809 10/27 (37%)
TPR 102..>211 CDD:440225 33/108 (31%)
TPR repeat 129..159 CDD:276809 10/29 (34%)
TPR repeat 164..192 CDD:276809 7/27 (26%)
PLN03209 <296..416 CDD:178748
RPAP3_C 416..503 CDD:464012
SgtbNP_853660.1 SGTA_dimer 5..64 CDD:465168 10/49 (20%)
TPR 1 15..49 8/34 (24%)
TPR 2 85..118 12/32 (38%)
TPR repeat 85..113 CDD:276809 10/27 (37%)
TPR 92..>200 CDD:440225 33/107 (31%)
TPR repeat 118..148 CDD:276809 10/29 (34%)
TPR 3 120..152 12/31 (39%)
TPR 4 153..186 9/32 (28%)
TPR repeat 153..181 CDD:276809 7/27 (26%)
Blue background indicates that the domain is not in the aligned region.

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