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Protein Alignment MED20 and SRB2
DIOPT Version :9
Sequence 1: | NP_001260223.1 |
Gene: | MED20 / 43952 |
FlyBaseID: | FBgn0013531 |
Length: | 268 |
Species: | Drosophila melanogaster |
Sequence 2: | NP_011907.1 |
Gene: | SRB2 / 856437 |
SGDID: | S000001083 |
Length: | 210 |
Species: | Saccharomyces cerevisiae |
Alignment Length: | 76 |
Identity: | 19/76 - (25%) |
Similarity: | 38/76 - (50%) |
Gaps: | 8/76 - (10%) |
- Green bases have known domain annotations that are detailed below.
Fly 70 PASTFSIIDNGTGKQVAIVADNIFDLLMLKMTNTFTSKKQTKIESRGARFEYGDFVIKLGSVTMM 134
||..|: .:.|| |.::|..:|..|::|.:..::..|.:: |.........::|.::...
Yeast 89 PALVFN--GSSTG-----VPESIDTILSSKLSNIWMQRQLIKGDA-GETLILDGLTVRLVNLFSS 145
Fly 135 EHFKGILIEIE 145
..|||:|||::
Yeast 146 TGFKGLLIELQ 156
|
Known Domains:
Indicated by green bases in alignment.
Gene | Sequence | Domain | Region |
External ID | Identity |
MED20 | NP_001260223.1 |
Med20 |
1..215 |
CDD:285776 |
19/76 (25%) |
SRB2 | NP_011907.1 |
Med20 |
1..209 |
CDD:400779 |
19/76 (25%) |
Information from Original Tools:
Tool |
Simple Score |
Weighted Score |
Original Tool Information |
BLAST Result |
Score |
Score Type |
Cluster ID |
Compara |
0 | 0.000 |
Not matched by this tool. |
Domainoid |
0 | 0.000 |
Not matched by this tool. |
eggNOG |
0 | 0.000 |
Not matched by this tool. |
Hieranoid |
0 | 0.000 |
Not matched by this tool. |
Homologene |
0 | 0.000 |
Not matched by this tool. |
Inparanoid |
0 | 0.000 |
Not matched by this tool. |
Isobase |
0 | 0.000 |
Not matched by this tool. |
OMA |
0 | 0.000 |
Not matched by this tool. |
OrthoFinder |
0 | 0.000 |
Not matched by this tool. |
OrthoInspector |
0 | 0.000 |
Not matched by this tool. |
orthoMCL |
1 |
0.900 |
- |
- |
|
OOG6_104763 |
Panther |
1 |
1.100 |
- |
- |
LDO |
PTHR12465 |
Phylome |
0 | 0.000 |
Not matched by this tool. |
RoundUp |
0 | 0.000 |
Not matched by this tool. |
SonicParanoid |
0 | 0.000 |
Not matched by this tool. |
TreeFam |
0 | 0.000 |
Not matched by this tool. |
|
2 | 2.000 |
|
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