DRSC/TRiP Functional Genomics Resources

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Protein Alignment MED20 and AT2G28230

DIOPT Version :10

Sequence 1:NP_001260223.1 Gene:MED20 / 43952 FlyBaseID:FBgn0013531 Length:268 Species:Drosophila melanogaster
Sequence 2:NP_180390.2 Gene:AT2G28230 / 817369 AraportID:AT2G28230 Length:219 Species:Arabidopsis thaliana


Alignment Length:146 Identity:34/146 - (23%)
Similarity:68/146 - (46%) Gaps:14/146 - (9%)


- Green bases have known domain annotations that are detailed below.


  Fly    67 SEYPASTFSIIDNGTGKQVAIVADNIFDLLMLKMTNTFTSKKQTKIESRGARFEYGDFVIKLGSV 131
            ::.|...:.||..   :::.:.||:...|:|.|:.   :.|.:..:...|.:::.|||.:::|.|
plant    70 ADQPNKYYFIIRT---QRIVLEADSSIQLIMEKLQ---SYKSKVALYFDGFQYQLGDFRLRVGKV 128

  Fly   132 --TMMEHFKGILIEIEYKSCVILAYCWEMIREMLQGFLGIAVNKDFPSYFAPQTIMTAMGQQQLH 194
              |..|:.:||::|:||.....:....:::.|.|:.:......:..|..|.  .|....|:..| 
plant   129 VPTHSENVRGIVMEVEYLPISSMEKAQKVMEEFLEIWNEALAKRSLPGKFV--NIDLNFGEFGL- 190

  Fly   195 AKHNDIFEPMDTVKQY 210
               .||:.|..|..:|
plant   191 ---GDIYTPQHTAVRY 203

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
MED20NP_001260223.1 Med20 1..215 CDD:400779 34/146 (23%)
AT2G28230NP_180390.2 Med20 1..208 CDD:400779 34/146 (23%)

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