DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Cds and CDS1

DIOPT Version :9

Sequence 1:NP_001286976.1 Gene:Cds / 43950 FlyBaseID:FBgn0010350 Length:447 Species:Drosophila melanogaster
Sequence 2:NP_009585.1 Gene:CDS1 / 852317 SGDID:S000000233 Length:457 Species:Saccharomyces cerevisiae


Alignment Length:415 Identity:155/415 - (37%)
Similarity:236/415 - (56%) Gaps:13/415 - (3%)


- Green bases have known domain annotations that are detailed below.


  Fly    37 HVDSEE--EKIPE--EKFVDELAKNLPQGTDK--TPEILDSALKDLPDRWKNWVIRGIFTWIMIC 95
            |..|:|  |.:.:  .|.:|:|.:.|.:...:  ||...:|.......|..|:.||.::|::||.
Yeast    10 HGTSKEIVESVTDATSKAIDKLQEELHKDASESVTPVTKESTAATKESRKYNFFIRTVWTFVMIS 74

  Fly    96 GFALIIYGGPLALMITTLLVQVKCFQEIISIGYQVYRIHGLPWFRSLSWYFLLTSNYFFYGENLV 160
            ||.:.:..|....::..|..|:..|:|.|::.....|...||..::|:||.|.|:.|:..|::|.
Yeast    75 GFFITLASGHAWCIVLILGCQIATFKECIAVTSASGREKNLPLTKTLNWYLLFTTIYYLDGKSLF 139

  Fly   161 DYFGVVINRVEYLKFLVTYHRFLSFALYIIGFVWFVLSLVKKYYIKQFSLFAWTHVSLLIVVTQS 225
            .:|.........|.|:||.|:|:.:.||::|||.||.||.|.:...||.....||:.||:||.|:
Yeast   140 KFFQATFYEYPVLNFIVTNHKFICYCLYLMGFVLFVCSLRKGFLKFQFGSLCVTHMVLLLVVFQA 204

  Fly   226 YLIIQNIFEGLIWFIVPVSMIVCNDVMAYVFGFFFGRTPLIKLSPKKTWEGFIGGGFATVLFGIL 290
            :|||:|:..||.||::|..:::.||:.||:.|..||:|.||::|||||.|||:|..|.|.|..|:
Yeast   205 HLIIKNVLNGLFWFLLPCGLVIVNDIFAYLCGITFGKTKLIEISPKKTLEGFLGAWFFTALASII 269

  Fly   291 FSYVLCNYQYFICPIQYSEEQGRMTMSCVPSYLFTPQEYSLKLFGIGK----TLNLYPFIWHSIS 351
            .:.:|..|.|..||::.........::|..:.:|.||.|.|......|    ::.:.|..:|:::
Yeast   270 LTRILSPYTYLTCPVEDLHTNFFSNLTCELNPVFLPQVYRLPPIFFDKVQINSITVKPIYFHALN 334

  Fly   352 LSLFSSIIGPFGGFFASGFKRAFKIKDFGDMIPGHGGIMDRFDCQFLMATFVNVYISSFI---RT 413
            |:.|:|:..|||||||||.||.||:||||..|||||||.||.||||:|.:|.|:|..:||   |.
Yeast   335 LATFASLFAPFGGFFASGLKRTFKVKDFGHSIPGHGGITDRVDCQFIMGSFANLYYETFISEHRI 399

  Fly   414 PSPAKLLTQIYNLKPDQQYQIYQSL 438
            .....|.|.:.||...|..::...|
Yeast   400 TVDTVLSTILMNLNDKQIIELIDIL 424

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CdsNP_001286976.1 CTP_transf_1 120..438 CDD:304393 131/324 (40%)
CDS1NP_009585.1 CTP_transf_1 96..420 CDD:419696 131/323 (41%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C157346818
Domainoid 1 1.000 275 1.000 Domainoid score I268
eggNOG 1 0.900 - - E1_COG0575
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H68173
Inparanoid 1 1.050 285 1.000 Inparanoid score I542
Isobase 1 0.950 - 0 Normalized mean entropy S804
OMA 1 1.010 - - QHG54574
OrthoFinder 1 1.000 - - FOG0001281
OrthoInspector 1 1.000 - - oto99846
orthoMCL 1 0.900 - - OOG6_101561
Panther 1 1.100 - - LDO PTHR13773
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R2065
SonicParanoid 1 1.000 - - X636
TreeFam 1 0.960 - -
1615.740

Return to query results.
Submit another query.