DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Cds and Cds1

DIOPT Version :9

Sequence 1:NP_001286976.1 Gene:Cds / 43950 FlyBaseID:FBgn0010350 Length:447 Species:Drosophila melanogaster
Sequence 2:NP_775546.2 Gene:Cds1 / 74596 MGIID:1921846 Length:461 Species:Mus musculus


Alignment Length:455 Identity:264/455 - (58%)
Similarity:328/455 - (72%) Gaps:19/455 - (4%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MAEVRRRKGEDEPLEDTAISGSDAANKRNSAADSSDH---VDSEEEKIPEEKFVDELAK------ 56
            |.|:|.|.|...|      .|:.|...|...|...||   ..|::|...::::.|..|:      
Mouse     1 MLELRHRGGCPGP------GGAGAPPPREGEAAGGDHETESTSDKETDIDDRYGDLDARGDSDVP 59

  Fly    57 NLPQGTDKTPEILDSALKDLPDRWKNWVIRGIFTWIMICGFALIIYGGPLALMITTLLVQVKCFQ 121
            .:|..:|:|||||..||..|..|||||.||||.|..||..|.||||.|...||:..|.:|||||.
Mouse    60 EVPPSSDRTPEILKKALSGLSSRWKNWWIRGILTLTMISLFFLIIYMGSFMLMLLVLGIQVKCFH 124

  Fly   122 EIISIGYQVYRIHGLPWFRSLSWYFLLTSNYFFYGENLVDYFGVVINRVEYLKFLVTYHRFLSFA 186
            |||:|||:||..:.|||||:|||||||..|||||||.:.|||...:.|.|.|:||:.||||:|||
Mouse   125 EIITIGYRVYHSYDLPWFRTLSWYFLLCVNYFFYGETVADYFATFVQREEQLQFLIRYHRFISFA 189

  Fly   187 LYIIGFVWFVLSLVKKYYIKQFSLFAWTHVSLLIVVTQSYLIIQNIFEGLIWFIVPVSMIVCNDV 251
            ||:.||..||||||||:|..||.:||||||:|||.||||:|:|||:|||:|||:||:|.::|||:
Mouse   190 LYLAGFCMFVLSLVKKHYRLQFYMFAWTHVTLLITVTQSHLVIQNLFEGMIWFLVPISSVICNDI 254

  Fly   252 MAYVFGFFFGRTPLIKLSPKKTWEGFIGGGFATVLFGILFSYVLCNYQYFICPIQYSEEQGRMTM 316
            .||:|||||||||||||||||||||||||.|:||:||.:.:|||..||||:||::|..:......
Mouse   255 TAYLFGFFFGRTPLIKLSPKKTWEGFIGGFFSTVIFGFIAAYVLSKYQYFVCPVEYRSDVNSFVT 319

  Fly   317 SCVPSYLFTPQEYSLKLFGIG----KTLNLYPFIWHSISLSLFSSIIGPFGGFFASGFKRAFKIK 377
            .|.||.||..|.|||..|...    :|::||||..|||:||.|:|:|||||||||||||||||||
Mouse   320 ECEPSELFQLQNYSLPPFLQAVLSRETVSLYPFQIHSIALSTFASLIGPFGGFFASGFKRAFKIK 384

  Fly   378 DFGDMIPGHGGIMDRFDCQFLMATFVNVYISSFIRTPSPAKLLTQIYNLKPDQQYQIYQSLKDNL 442
            ||.:.||||||||||||||:||||||:|||:||||.|:|:|:|.|:..|:|:||..||::||.:|
Mouse   385 DFANTIPGHGGIMDRFDCQYLMATFVHVYITSFIRGPNPSKVLQQLLVLQPEQQLNIYRTLKIHL 449

  Fly   443  442
            Mouse   450  449

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CdsNP_001286976.1 CTP_transf_1 120..438 CDD:304393 210/321 (65%)
Cds1NP_775546.2 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..68 18/72 (25%)
CTP_transf_1 123..457 CDD:304393 213/327 (65%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C167845819
Domainoid 1 1.000 461 1.000 Domainoid score I481
eggNOG 1 0.900 - - E1_COG0575
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H68173
Inparanoid 1 1.050 535 1.000 Inparanoid score I1181
Isobase 1 0.950 - 0 Normalized mean entropy S804
OMA 1 1.010 - - QHG54574
OrthoDB 1 1.010 - - D1072976at2759
OrthoFinder 1 1.000 - - FOG0001281
OrthoInspector 1 1.000 - - otm43666
orthoMCL 1 0.900 - - OOG6_101561
Panther 1 1.100 - - LDO PTHR13773
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R2065
SonicParanoid 1 1.000 - - X636
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
1817.750

Return to query results.
Submit another query.