DRSC/TRiP Functional Genomics Resources

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Protein Alignment Cds and cds2

DIOPT Version :9

Sequence 1:NP_001286976.1 Gene:Cds / 43950 FlyBaseID:FBgn0010350 Length:447 Species:Drosophila melanogaster
Sequence 2:NP_001119975.1 Gene:cds2 / 100144929 XenbaseID:XB-GENE-986549 Length:465 Species:Xenopus tropicalis


Alignment Length:458 Identity:266/458 - (58%)
Similarity:327/458 - (71%) Gaps:21/458 - (4%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MAEVRRRKGEDEPLEDTAISGSDAANKRNSAADSSDHVDSEEEKIPEEKFVD-ELAKN------- 57
            |.|:|:|.|.::|.|     |.|.........|.....|.|:.:...|...| |.|.:       
 Frog     1 MTELRQRVGREQPQE-----GEDKLPYDPQDQDQDQDQDQEQGEAESEVKTDGETASDSESKTDT 60

  Fly    58 --LPQG--TDKTPEILDSALKDLPDRWKNWVIRGIFTWIMICGFALIIYGGPLALMITTLLVQVK 118
              ..||  ||.|||:|:.||.:|..|||||.:|||.|..||..|.:|||.||:.||:..:.||:|
 Frog    61 GGTQQGTPTDDTPEVLNRALANLSSRWKNWWVRGILTLAMISFFFIIIYLGPIVLMMIVMCVQIK 125

  Fly   119 CFQEIISIGYQVYRIHGLPWFRSLSWYFLLTSNYFFYGENLVDYFGVVINRVEYLKFLVTYHRFL 183
            ||||||.|||.||..:.|||||:|||||||..|||||||.:.|||..::.|.|.|:.|..||||:
 Frog   126 CFQEIIMIGYNVYHSYDLPWFRTLSWYFLLCVNYFFYGETVTDYFFTLVQREEPLRILSKYHRFI 190

  Fly   184 SFALYIIGFVWFVLSLVKKYYIKQFSLFAWTHVSLLIVVTQSYLIIQNIFEGLIWFIVPVSMIVC 248
            |||||:.||..||||||||:|..||.:|.||||:||||||||:|||.|:|||:||||||:|.::|
 Frog   191 SFALYLTGFCMFVLSLVKKHYRLQFYMFGWTHVTLLIVVTQSHLIIHNLFEGMIWFIVPISCVIC 255

  Fly   249 NDVMAYVFGFFFGRTPLIKLSPKKTWEGFIGGGFATVLFGILFSYVLCNYQYFICPIQYSEEQGR 313
            ||:|||:|||||||||||||||||||||||||.|:||:||:|.|||:..|.||:||::::.|..|
 Frog   256 NDIMAYMFGFFFGRTPLIKLSPKKTWEGFIGGFFSTVVFGLLLSYVMAGYSYFVCPVEFNNETNR 320

  Fly   314 MTMSCVPSYLFTPQEYSLKLFGIG----KTLNLYPFIWHSISLSLFSSIIGPFGGFFASGFKRAF 374
            .|:.|.||.||..|||.:......    ||:.:|||..|||:||.|:|:||||||||||||||||
 Frog   321 FTVDCEPSELFQLQEYHIPAMFHSVISWKTVWMYPFQIHSIALSTFASLIGPFGGFFASGFKRAF 385

  Fly   375 KIKDFGDMIPGHGGIMDRFDCQFLMATFVNVYISSFIRTPSPAKLLTQIYNLKPDQQYQIYQSLK 439
            |||||.:.||||||||||||||:||||||||||:||||.|:|:||:.|...|:||||..|:.:||
 Frog   386 KIKDFANTIPGHGGIMDRFDCQYLMATFVNVYIASFIRGPNPSKLIQQFLTLRPDQQIHIFNTLK 450

  Fly   440 DNL 442
            .:|
 Frog   451 SHL 453

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CdsNP_001286976.1 CTP_transf_1 120..438 CDD:304393 213/321 (66%)
cds2NP_001119975.1 CTP_transf_1 127..446 CDD:304393 212/318 (67%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 464 1.000 Domainoid score I466
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 535 1.000 Inparanoid score I1176
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1072976at2759
OrthoFinder 1 1.000 - - FOG0001281
OrthoInspector 1 1.000 - - otm48838
Panther 1 1.100 - - O PTHR13773
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X636
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
77.160

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