DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment wb and dsd

DIOPT Version :9

Sequence 1:NP_723870.1 Gene:wb / 43946 FlyBaseID:FBgn0261563 Length:3375 Species:Drosophila melanogaster
Sequence 2:NP_001263013.1 Gene:dsd / 43315 FlyBaseID:FBgn0039528 Length:1323 Species:Drosophila melanogaster


Alignment Length:1445 Identity:261/1445 - (18%)
Similarity:385/1445 - (26%) Gaps:670/1445 - (46%)


- Green bases have known domain annotations that are detailed below.


  Fly   389 YSLSQLKVSARLDC-NGHANRSH-------------------------------ESPDDPLM--- 418
            ||:| :|.|..:|. :.|.||.|                               :|.|.||:   
  Fly   106 YSVS-VKCSWLIDARHPHWNRRHNTNPSRTANIRIHLREFATECGWDHLYIYDGDSVDSPLLAVF 169

  Fly   419 ---------------QCICQHNTCGAQCEQCCPLFQDRPYQMGG------------ECEICQCYG 456
                           |.|....|.      ....|.|..|.|.|            :.:..:|.|
  Fly   170 SGLMYRGNFSIRRVPQVIATSGTA------LVHFFSDDAYNMSGFNLTYKMNSCPSDSDEVECSG 228

  Fly   457 HAE----SCTYDPFLDKGICQ--SCSNNTAGIECEFCEMGFYRELDAPLTDPCLPCSCNPARSTG 515
            |.:    .|..||......|.  :|.||                             |..:::.|
  Fly   229 HGKCRDGDCICDPMYRGEACNIAACPNN-----------------------------CFESKNQG 264

  Fly   516 GCQSDGGSCNCLEGFQGKNCEEC---------------APG--------------------YYGD 545
            .|:.|...|:|.|||.|.:|.:.               ||.                    .|| 
  Fly   265 HCRLDQERCSCYEGFAGDDCSQISAHGAWSTVHPKHSPAPAGSASHGATIWRDTLHIVGGESYG- 328

  Fly   546 DCKRCECDERGSLGSTGSCSGVCQCKLNV-------EGSTCSECAPG------------------ 585
                     ||.|.||...:|      ||       :||...:...|                  
  Fly   329 ---------RGKLMSTYDFNG------NVWETVHPEDGSEVPDKRYGASTVMYGDKIFMYGGVVK 378

  Fly   586 ---------YFDLSAE-------------NAEGCTSCWCSGVSQTCHSAKL-------------- 614
                     .||:||.             ||.|.|:..|..:....|:|.|              
  Fly   379 GHGISNELWAFDVSARTWANISVRADPSCNATGGTTAMCGPLHVVGHTATLVPGYGDKNNYQYMV 443

  Fly   615 ---------------QTLAFETLNDWKITD-----IQRVKPISIPVDAETNRL-IFANELDEVEA 658
                           |...|.: .:|:|..     ::.....|...|..|.:: ::...:.|.| 
  Fly   444 VIFGHSPNYGYLNTVQEFNFAS-REWRIVPTTGYVVKGGYGHSAAYDFLTEKVYVYGGIVSESE- 506

  Fly   659 IYWQASLGYLGNRLTSYGSRLQLVLSWDVIRGDRSGKPTTGPNVILVGKNGLKIAFG-------D 716
                 |...|.:||.:|....::   |.::....|.:.....|.:   ..||.:.||       .
  Fly   507 -----SSQVLSSRLYAYEPATRV---WSLLSAAPSARLLHTANFV---NQGLMMVFGGNTHNDTS 560

  Fly   717 ESLDGLGINLNVTLTEV---GWYHVPPTVVDIKTRLRRTEGGDYHGESVTRSQFLSVLVSLDAVL 778
            :|......:.::.:.:|   .| |..|....::..|.|     :...||...:.|.:....:..|
  Fly   561 QSYGAKCYSQDLLVYDVYCDSW-HYHPMPGHLQADLAR-----FGHSSVVFEESLYIYGGFNGQL 619

  Fly   779 IR---------AAFHTDQGE----------------------TSLERAVIYSGGVELGGKSSSQV 812
            :.         .:::|.|.:                      |.::|:.||         ...|.
  Fly   620 LNDMLRYQPGYCSYYTKQEKCTAARPGVKCIWDVQKMRCIAITQVQRSAIY---------GREQY 675

  Fly   813 EQCLCPA----GYTG------------LSCEGC---AFG-------------------FKRIYEN 839
            :...||:    ..|.            .||:.|   |||                   ...::..
  Fly   676 DYVACPSKSRLTLTSELLHDVHRCQELASCQSCVSTAFGCTYCGNGVCSKERCRETTSMASVFFE 740

  Fly   840 TSDHQILSKCIPCPCNG-HSNSCDL-----------QSGNCGDCMHN---TFGDRCERCQ--LGY 887
            :|....:|...| |.|. |.:||.:           |..||..|..|   .:.....||:  ..|
  Fly   741 SSTQMAVSTASP-PLNAKHLDSCPISEEYLVSSVCDQLHNCRACSANLACRWDSEHNRCKSYTSY 804

  Fly   888 YGNPLQGTPNDCKRCACPLSEDSNNFSPSCQLKSYNYMDLNPQFELIEHAEYICTQCPEGYTGDH 952
            .|..|..|.::   .||         ||||...:.                  |..|.|    |.
  Fly   805 GGLALNRTQDE---VAC---------SPSCASLTN------------------CQNCTE----DE 835

  Fly   953 CQVCDDGYFGNPRQPGSSCQRC--------DCAGGPCNVTTGECITCR-----------GNTEGW 998
            |..|.:.            |||        ....|.|...|.....||           |:|...
  Fly   836 CIWCQNE------------QRCVDRNAYTASFPYGQCREWTTFTAKCRSAPIQSTALAVGSTTAL 888

  Fly   999 HCERCKLGYWG-------DPAVG-CDPCHCHTEGSESGLCDSTDGQCLCKPRYAGQKCDECDVGY 1055
            ...:|  ||:.       |||.| ||      .||.:||     |:|:.....|.....||.:.:
  Fly   889 SSAQC--GYYNSCQMCLDDPACGWCD------NGSNTGL-----GRCVVGGALAPYDDTECALKH 940

  Fly  1056 ANVELRCPSCNCDPLGSLVQDRCDPHTGQCHCKEGVMGAKCHECQDGYFGMNAVAYRMDDLAALR 1120
            . ....||.|||:              |..:|.                                
  Fly   941 W-FFTSCPRCNCN--------------GHSYCN-------------------------------- 958

  Fly  1121 QNSDSDDDEWELVPDTEDPNSESTVACEECHCSSVGSLSSDCDKRTGQCACLANVTGRRCDKCRP 1185
                                       ::.||      ...|:..|         ||..|:|||.
  Fly   959 ---------------------------DQQHC------EQPCNNLT---------TGAHCEKCRT 981

  Fly  1186 GHW-NLTAGEGCRDCRCDPHGSRGHECNPWTGQCDCKI-GVGGQHCNECTEGFFGFSTEGCQRCS 1248
            |:| |...|..|:.|.|:   .:|..|:|.||:|.|.. |:.|.||.:|.              |
  Fly   982 GYWGNPINGGKCQRCDCN---GQGVYCHPDTGKCFCTTKGIVGDHCEKCD--------------S 1029

  Fly  1249 ACRSEGQVCDPHNGRCICPKFTRGLGCGQCVPGTWGWQARLGCRECECDHIGSIGQQCSTGDGQC 1313
            .....|   ||..|.|....             |..:|......:.|..|...|..:.|.|.   
  Fly  1030 QNHYHG---DPLKGSCYYEL-------------TIDYQFTFNLSKKEDRHFTQINFRNSPGK--- 1075

  Fly  1314 QCREGYSGRKCDTCAIGYFGYPECRRCGCDAEGSFTQADGSIACD---------SNGQCPCKSLV 1369
                                 ||            ..||.:|.|.         .....|...::
  Fly  1076 ---------------------PE------------IDADFTITCSVPAKMDISVKRAGSPDMLIL 1107

  Fly  1370 VGLKCDTCMQS------TFGLSAQNPEGCTRCFCFGRSGECEQSDLS---WGHIRMAESRNLSVQ 1425
            ||:.|.|....      .||.|..:....|..:.|       ..|..   |..|..::...|::|
  Fly  1108 VGVNCSTFRHRFPKTDYQFGHSPDDNSSLTTFYVF-------VHDFQPPIWIQIAFSQYPKLNLQ 1165

  Fly  1426 Q---------------------IRPHSVPSSDYE--------YIVVVQMEGSSFHR--EDAEIQR 1459
            |                     |:      ..|:        ::.:.||....|.:  .|.|.:.
  Fly  1166 QFFITFSSCFLLLLLMAAVLWKIK------QKYDMFRRRQRLFVEMEQMASRPFSQVLVDIENRE 1224

  Fly  1460 MNDLSLVPKSTGNVS 1474
            ..||||..:..|::|
  Fly  1225 SIDLSLTLEGIGHLS 1239

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
wbNP_723870.1 Laminin_N 164..396 CDD:278484 3/6 (50%)
EGF_Lam 401..450 CDD:238012 17/110 (15%)
TNFRSF <407..507 CDD:304602 25/166 (15%)
EGF_Lam 505..552 CDD:238012 15/81 (19%)
Laminin_EGF 550..597 CDD:278482 17/93 (18%)
Laminin_B 660..798 CDD:278481 27/178 (15%)
EGF_Lam 851..900 CDD:238012 17/65 (26%)
Laminin_EGF <943..971 CDD:278482 5/27 (19%)
VSP 953..1414 CDD:146106 97/507 (19%)
Laminin_EGF 974..1018 CDD:278482 17/70 (24%)
EGF_Lam 1017..1065 CDD:238012 11/47 (23%)
Laminin_EGF 1065..>1105 CDD:278482 5/39 (13%)
EGF_Lam 1150..1197 CDD:238012 14/47 (30%)
Laminin_EGF 1199..1247 CDD:278482 14/48 (29%)
EGF_Lam 1247..1292 CDD:238012 8/44 (18%)
Laminin_EGF 1294..1342 CDD:278482 7/47 (15%)
Laminin_EGF 1340..1392 CDD:278482 12/66 (18%)
Laminin_B 1486..1611 CDD:278481
EGF_Lam 1669..1716 CDD:238012
Laminin_EGF 1718..1767 CDD:278482
EGF_Lam 1772..1819 CDD:238012
CrfC <1933..2267 CDD:223771
Laminin_II 2277..2400 CDD:283628
LamG 2399..>2492 CDD:304605
Laminin_G_2 2616..2755 CDD:280389
Laminin_G_2 2804..2944 CDD:280389
Laminin_G_2 3038..3169 CDD:280389
LamG 3192..3347 CDD:238058
dsdNP_001263013.1 CUB 86..212 CDD:238001 22/112 (20%)
PLN02153 290..582 CDD:177814 50/320 (16%)
KELCH repeat 308..349 CDD:276965 10/56 (18%)
Kelch_5 355..391 CDD:290565 2/35 (6%)
KELCH repeat 358..420 CDD:276965 10/61 (16%)
KELCH repeat 424..474 CDD:276965 7/50 (14%)
KELCH repeat 482..531 CDD:276965 11/57 (19%)
KELCH repeat 535..588 CDD:276965 10/56 (18%)
PSI 821..870 CDD:279745 14/82 (17%)
EGF_Lam 948..994 CDD:238012 19/133 (14%)
EGF_Lam 995..1040 CDD:238012 18/64 (28%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45445164
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR10574
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
22.030

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