DRSC/TRiP Functional Genomics Resources

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Protein Alignment wb and LanB1

DIOPT Version :10

Sequence 1:NP_723870.1 Gene:wb / 43946 FlyBaseID:FBgn0261563 Length:3375 Species:Drosophila melanogaster
Sequence 2:NP_476618.1 Gene:LanB1 / 34068 FlyBaseID:FBgn0261800 Length:1788 Species:Drosophila melanogaster


Alignment Length:2219 Identity:518/2219 - (23%)
Similarity:786/2219 - (35%) Gaps:686/2219 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly   101 MLAIAS--SESVTKKKPPQ--RRRNGKLQKSGGGAGGGALRLLKTEDVYSSSFSGGLYPPLFNVV 161
            :||:.|  .:.|..::|||  ||...|...:         :.:||.....||    .||...|::
  Fly    11 VLALLSWQWDPVDSQRPPQHGRRDRPKYPPN---------KFIKTHPCERSS----CYPATGNLL 62

  Fly   162 --PRAQISVNATCGQNGAEEYC--KQVGAKPCGICNAHSS---DRAKQRSIQSLISSGSGSGSGS 219
              ...:::.::|||.:..|.:|  ..:..|.|.:|:....   |..|...|..:|..   :..|:
  Fly    63 IGRENRLTASSTCGLHSPERFCILSHLQDKKCFLCDTREETKHDPYKNHRIGQIIYK---TKPGT 124

  Fly   220 GFEEGWWQSPTLQGGRQFEYVTILLDLKQTFQIFSVWLKSANSPRPASWILEKSLD-GINFEPWQ 283
            .... ||||   :.|:  |..||.|||:..|. |:..:.:..:.|||:..:|:|.| |..:..::
  Fly   125 NIPT-WWQS---ENGK--ENATIQLDLEAEFH-FTHLIITFTTFRPAAMYIERSFDFGQTWHIYR 182

  Fly   284 YFGLSDADCQRRWNLSGQNGKYVFQNDTEIICSTQFSKPGPLENGVLHASLLKNRPGATDQSPE- 347
            ||..   ||:.    |......|.:|.|:::|::::|...|..||.:...:|......||...| 
  Fly   183 YFAY---DCKE----SFPGVPTVLENITDVMCTSRYSNVEPSRNGEVIFRVLPPNINVTDPYAEH 240

  Fly   348 LMKFITTRYIRIRLQGMHSTANQDNSLDWLLDSPSLEKHSFYSLSQLKVSARLDCNGHANR---- 408
            :...:....:||::..:|...  ||.||..|::   |:..:|.:|.:.|.....|.|||::    
  Fly   241 VQNQLKMTNLRIQMTKLHKLG--DNLLDSRLEN---EEKYYYGISNMVVRGSCSCYGHASQCLPL 300

  Fly   409 ----SHESPDDPLM--QCICQHNTCGAQCEQCCPLFQDRPYQMG-----GECEICQCYGHAESCT 462
                |....:|.::  :|.|.|||.|..||:|...|.|.|::..     ..|:.|:|..||.||.
  Fly   301 DPAFSQADNEDGMVHGRCECTHNTKGMNCEECEDFFNDLPWKPAFGKKTNACKKCECNDHAVSCH 365

  Fly   463 YDP-------FLDKGICQSCSNNTAGIECEFCEMGFYRELDAPLTDP--CLPCSCNPARST--GG 516
            :|.       |:..|:|.:|.:||.|..||.|...|||:.:..:|..  |.||.|:|..|:  |.
  Fly   366 FDEAVFTASGFVSGGVCDNCLHNTRGQHCEECMPYFYRDPEQDITSERVCQPCDCDPQGSSDDGI 430

  Fly   517 CQS-----DG---GSCNCLEGFQGKNCEECAPGYYG------DDCKRCECDERGSLGSTGSC--- 564
            |.|     :|   |:|:|.....|:.|.:|..||:.      :.|:.|.|:..|:|.::| |   
  Fly   431 CDSLNELEEGAVAGACHCKAFVTGRRCNQCKDGYWNLQSDNPEGCEPCTCNPLGTLNNSG-CVMR 494

  Fly   565 SGVCQCKLNVEGSTCSECAPGYFDLSAENAEGCTSC----------WCSGVSQTCHSAKLQTLAF 619
            :|.|:||..|.|..|::|.|..:.|| |:.|||:.|          :|..:|..|          
  Fly   495 TGECKCKKYVTGKDCNQCMPETYGLS-ESPEGCSLCNCDAGGSYDNYCDVISGQC---------- 548

  Fly   620 ETLNDWKITDIQRVKP------ISIPVDAETNRLI-FANELDEVEAIYWQASLGYLGNRLTSYGS 677
                        |.:|      .|.|   :.|..| ...|:.|.|.:          :...|||:
  Fly   549 ------------RCRPHMTGRSCSQP---KQNYFIPLLPEVHEAEVV----------DECISYGA 588

  Fly   678 RLQLVLSWDVIRGDRSGKPTTGPNVILVGKNGLKIAFGDESLDGLGINLNVTLTEVGWYHVPP-- 740
                                 ..|..||.          |:.||       :.|.:|:..||.  
  Fly   589 ---------------------NGNCSLVA----------ETPDG-------SFTGIGFTRVPENS 615

  Fly   741 ----TVVDIK--------TRLRRTEGGDYH------------------GE------SVTRSQF-- 767
                ||.||.        .|.:.|..||:.                  ||      |.||..|  
  Fly   616 ELVFTVGDIPRSMPYDAVIRYQSTSRGDWENAFITLVRPDQVDPEGGCGELAAATSSETRIPFSL 680

  Fly   768 ---LSVLVSLDAVLIRAA--------FHTDQGETSLERAVIYSGGVEL----------GGKSSSQ 811
               ...:|:|:.|.:.|.        |...:.:.....|.|....:.|          .|...:.
  Fly   681 PDRSRQVVALNEVCLEAGKVYKFRIYFERKRHDVDSPTATILVDSLTLIPRIDVTPIFQGSVLAD 745

  Fly   812 VEQCLCPAGYTGLSCEGCAFGFKRIYENTSDHQILSKCIP---------CPCN---GHSNSCDLQ 864
            :.:    ..|...:|:...:...  |::....|.|...:.         |.||   ..|..|:..
  Fly   746 IRK----KDYEKYNCKSSLYDMN--YKSDPKCQNLDNILSVFVHDGASMCNCNPTGSLSKVCESN 804

  Fly   865 SGNCGDCMHNTFGDRCERCQLGYYGNPLQGTPNDCKRCACPL--SEDSNNFSPSCQLKSYNYMDL 927
            .|.| .|..|..|.:|::|..|.||    ..|..||.|.|..  |:|             .|.||
  Fly   805 GGYC-QCKPNVVGRQCDQCAPGTYG----FGPEGCKACDCNSIGSKD-------------KYCDL 851

  Fly   928 NPQFELIEHAEYICTQC---PEGYTGDHCQVCDDGYFGNPRQPGSSCQRCDCAG--GPCNVTTGE 987
                        |..||   |..| |..|..|..||:..|     .|:.|.|.|  ..|:...|.
  Fly   852 ------------ITGQCQCVPNTY-GRECNQCQPGYWNFP-----ECRVCQCNGHAATCDPIQGT 898

  Fly   988 CITCRGNTEGWHCERCKLGYWGDP----AVGCDPCHCHTEGSESGLCDSTDG----------QCL 1038
            ||.|:.:|.|:.|:.|..||:|:|    .:||.||.| .|...|||..: ||          .|.
  Fly   899 CIDCQDSTTGYSCDSCLDGYYGNPLFGSEIGCRPCRC-PETVASGLAHA-DGCSLDTRNNNMLCH 961

  Fly  1039 CKPRYAGQKCDEC-DVGYANVEL--RCPSCNCDPLGSLVQ-DRCDPHTGQC-HCKEGVMGAKCHE 1098
            |:..|:|.:|:.| |..:.|.:.  .|..|.|.....|.. ..||..||.| .|.....|..|..
  Fly   962 CQEGYSGSRCEICADNFFGNPDNGGTCSKCECSNNVDLYDTGNCDRQTGACLKCLYQTTGDHCEL 1026

  Fly  1099 CQDGYFGMNAVAYRMDDLAALRQNSDSDDDEWELVPDTEDPNSESTVACEECHCSSVGSLS--SD 1161
            |:||:||           .||:||                        |::|.|..:|:.:  :.
  Fly  1027 CKDGFFG-----------DALQQN------------------------CQQCECDFLGTNNTIAH 1056

  Fly  1162 CDKRTGQCACLANVTGRRCDKCRPGHWNLTAGEGCRDCRCDPHGSRGHECNPWTGQCDCKIGVGG 1226
            ||:.||||.||.||.|.|||:|...||.:.:||||..|.|||.|:...:||.:||||.||.|.||
  Fly  1057 CDRFTGQCPCLPNVQGVRCDQCAENHWKIASGEGCESCNCDPIGALHEQCNSYTGQCQCKPGFGG 1121

  Fly  1227 QHCNECTEGFFGFSTEGCQRCSACRSEGQVCDPHNGRCICPKFTRGLGCGQCVPGTWGWQARLGC 1291
            :.||:|...::|...|.||                                              
  Fly  1122 RACNQCQAHYWGNPNEKCQ---------------------------------------------- 1140

  Fly  1292 RECECDHIGSIGQQCSTGDGQCQCREGYSGRKCDTCAIGYFG-YPECRRCGCDAEGSFTQADGSI 1355
             .||||..|:...||....|.|.|.||..|.||:.||.||.| :|.|..||              
  Fly  1141 -PCECDQFGAADFQCDRETGNCVCHEGIGGYKCNECARGYIGQFPHCSPCG-------------- 1190

  Fly  1356 ACDSNGQCPCKSLVVGLKCDTCMQSTFGLSAQNPEGCTRCFCFGRSGECEQSDLSWGHIRMAESR 1420
            .|.:|.     .|::....|....:..........|.|..:    :.|..:.|....||     |
  Fly  1191 ECFNNW-----DLILSALEDATTATILRAKEIKQVGATGAY----TSEFSELDKKLQHI-----R 1241

  Fly  1421 NLSVQQIRPHSVPSSDYEYIVVVQMEGSSFHREDAEIQRMNDLSLVPKSTGNVSIGAYGQFYHPL 1485
            ||    ::..||...|.|.:             |.|.|.:.|  .:..|.|.:|           
  Fly  1242 NL----LQNTSVSLVDIEKL-------------DYETQSLRD--QLQASHGRLS----------- 1276

  Fly  1486 YFQLPPQFYGDRTSSYGGFLYFTLITEGAHKPLERNILGQYPLVQLHAHSKLLLDFYEYEEFEYS 1550
                       .|......:|.:|...|..            |..|..||:|:      ::....
  Fly  1277 -----------ETEQNLDDIYNSLSLSGVE------------LESLQNHSRLV------QQLSKE 1312

  Fly  1551 LNVTHRVPLHESFWKYHHTSQAVDRNTLMAALQNIRHIFIRAFAFADFQEVVLQNVHMDAAIYIK 1615
            |. .:.:.|.||              .:..||...||.:.|           :.|:..     :|
  Fly  1313 LK-ENGIQLQES--------------NIEGALNLTRHAYER-----------VSNLST-----LK 1346

  Fly  1616 GSTNLIAKGVERCKCPKRFDGLSCQDPGRSFYRWRNTTIVESVFIEDLIGRAAPCHCNGRSSDCD 1680
            ...|.:|...:| .| ||.:.||.:....:.....|..::|..       ||.......:..:.:
  Fly  1347 DEANELASNTDR-NC-KRVENLSNKIQAEADDLANNNKLIEDY-------RAELTSLTSQIPELN 1402

  Fly  1681 RETGVCQNCRGNTGGDHCHQCAEGFYGDPNSPHGCQACPCPETNRNFARGCNVWDGEVSCVCKPG 1745
            .:  ||     ...||.|.....|                        .||....|.:||     
  Fly  1403 NQ--VC-----GKPGDPCDSLCGG------------------------AGCGHCGGFLSC----- 1431

  Fly  1746 YTGRLCERCQAGYFGDPMRYPNTTCQPCNCHPDGIQTEGCDVETGRCYCREGVTGLKCDKCQAER 1810
                                           ..|.:|..   |......::..|.:...|.||::
  Fly  1432 -------------------------------EHGAKTHS---EEALKVAKDAETAITSKKDQADQ 1462

  Fly  1811 HHLVDNGCKICDNCTLLLLDYMELVGNKLRRGMHNMDLTGIPAPYRKLSEYESAYEKWNGRHWDF 1875
                          |:..|...:|..::                         ||||   ....|
  Fly  1463 --------------TIRALTQAKLNASE-------------------------AYEK---AKRGF 1485

  Fly  1876 SQTKRRLQDYDSADILKLEAHAENL-----KFQSRKAVATIGKREFAIKSMREDAVTQQHSVGLL 1935
            .|::|.|...::.  :||   ||||     .||..|..:....:|.|.|::..|...:...:..|
  Fly  1486 EQSERYLNQTNAN--IKL---AENLFIALNNFQENKTASPSESKELAQKTLDLDLKLEPEEIETL 1545

  Fly  1936 RSEILQTLSDLHGYGKSAHYLSLP--TALKQARFYLQAIREH-DQMVQGIRSTNDCAWKHFYAMG 1997
            ..:|.:.:|.|... ::..|.:.|  ..:...:....|.:|. |:::....|..:.......:.|
  Fly  1546 GDQINRAVSSLKNV-EAIIYRTKPDLDRVNNLQSIANATKEKADKILDSANSVVESLAAADESQG 1609

  Fly  1998 NASDASFDESGRLEMLWRDLNQTNHRVVDMRLQVDRVQEVENEAEDVLEHVRNLSIRVGESHQEL 2062
            .|.||....:..:|:..:||.:.:          :.....|..|.:..:.|..|:.:|    |:|
  Fly  1610 KAKDAIQQANSNIELAGQDLEKID----------EETYSAEAPANNTAQQVEKLAKKV----QKL 1660

  Fly  2063 DELNQRISDHLDPGYLEQGEGLLRLTVQRQIMLNGHLNQLDGYRILLNTTL---GVKTEQQREVR 2124
            .  |..:.:..|...:.:..|.::|...|   ..|..|.|.......|.||   ..::|..||..
  Fly  1661 Q--NNIMKNDRDAKEITKEAGSVKLEAMR---ARGEANNLQSATSATNQTLTDRASRSENARERA 1720

  Fly  2125 KHWLPKAEK 2133
            |..|.:|.|
  Fly  1721 KQLLQRASK 1729

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
wbNP_723870.1 Laminin_N 153..398 CDD:459653 65/253 (26%)
EGF_Lam 401..450 CDD:238012 18/63 (29%)
EGF_Lam 505..552 CDD:238012 19/62 (31%)
Laminin_EGF 550..597 CDD:395007 19/49 (39%)
Laminin_B 660..813 CDD:459652 36/213 (17%)
EGF_Lam 851..900 CDD:238012 16/60 (27%)
Laminin_EGF <943..971 CDD:395007 10/30 (33%)
Laminin_EGF 974..1018 CDD:395007 18/49 (37%)
EGF_Lam 1017..1065 CDD:238012 18/60 (30%)
Laminin_EGF 1065..>1105 CDD:395007 14/41 (34%)
EGF_Lam 1150..1197 CDD:238012 23/48 (48%)
Laminin_EGF 1199..1247 CDD:395007 23/47 (49%)
EGF_Lam 1247..1292 CDD:238012 0/44 (0%)
Laminin_EGF 1294..1342 CDD:395007 23/48 (48%)
Laminin_EGF 1340..1392 CDD:395007 6/51 (12%)
Laminin_B 1486..1626 CDD:459652 22/139 (16%)
EGF_Lam 1669..1716 CDD:238012 6/46 (13%)
Laminin_EGF 1718..1767 CDD:395007 5/48 (10%)
EGF_Lam 1772..1819 CDD:238012 7/46 (15%)
YhaN <1907..2141 CDD:443752 46/233 (20%)
SMC_prok_B <2123..>2390 CDD:274008 4/11 (36%)
Laminin_II 2279..2400 CDD:368703
LamG 2399..>2492 CDD:473984
LamG 2586..2753 CDD:238058
Laminin_G_2 2804..2944 CDD:460494
LamG 3018..3167 CDD:238058
LamG 3192..3347 CDD:238058
LanB1NP_476618.1 Laminin_N 54..286 CDD:459653 65/253 (26%)
EGF_Lam 287..343 CDD:238012 18/55 (33%)
Laminin_EGF 355..415 CDD:395007 21/59 (36%)
Laminin_EGF 418..475 CDD:395007 16/56 (29%)
EGF_Lam 477..526 CDD:238012 19/50 (38%)
EGF_Lam 529..567 CDD:214543 9/62 (15%)
EGF_Lam 789..834 CDD:214543 16/49 (33%)
Laminin_EGF 837..885 CDD:395007 20/78 (26%)
Laminin_EGF 883..930 CDD:395007 16/46 (35%)
Laminin_EGF 933..988 CDD:395007 16/56 (29%)
Laminin_EGF 991..1035 CDD:395007 16/54 (30%)
Laminin_EGF 1043..1091 CDD:395007 22/47 (47%)
Laminin_EGF 1094..1142 CDD:395007 23/94 (24%)
Laminin_EGF 1142..1190 CDD:395007 22/47 (47%)
Mplasa_alph_rch 1228..>1771 CDD:275316 134/743 (18%)
cc_DmLAMB1-like_C 1717..1786 CDD:411973 6/13 (46%)
Blue background indicates that the domain is not in the aligned region.

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