DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment wb and Lamc3

DIOPT Version :10

Sequence 1:NP_723870.1 Gene:wb / 43946 FlyBaseID:FBgn0261563 Length:3375 Species:Drosophila melanogaster
Sequence 2:NP_001101300.1 Gene:Lamc3 / 311862 RGDID:1309399 Length:1580 Species:Rattus norvegicus


Alignment Length:1470 Identity:407/1470 - (27%)
Similarity:570/1470 - (38%) Gaps:443/1470 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly   127 SGGGAG------GGALRLLKTEDVYSSSFSGGLYPPLFNVVPRAQISVNATCGQNGAEEYCKQVG 185
            :|.|.|      |.|.|.|               |...|.....:...:.|||| ..|::|..||
  Rat    27 TGAGMGSCYDGAGRAQRCL---------------PEFENAAFGRRAEASHTCGQ-PPEDFCPHVG 75

  Fly   186 A----KPCGICNAHSSDRAKQRSIQSLISSGSGSGSGSGFEEGWWQSPTLQGGRQF-EYVTILLD 245
            |    ..|..|:  .:|..::.....|....|...|      .|||||::..|.|: ..|.:.|.
  Rat    76 APGAGPQCQRCD--DADPRRRHDASYLTDFHSPDDS------TWWQSPSMAFGVQYPTSVNLTLH 132

  Fly   246 LKQTFQIFSVWLKSANSPRPASW-ILEKSLDGINFEPWQYFGLSDADCQRRWNLSGQNGKYVFQN 309
            |.:.::|..|.||...| ||.|: |.:::..|..:||:||:   .|.||:.:  ....|.|:...
  Rat   133 LGKAYEITYVRLKFHTS-RPESFAIYKRTHTGGPWEPYQYY---SASCQKTY--GHPEGHYLRPG 191

  Fly   310 DTEII--CSTQFSKPGPLENGVLHASLLKNRPGA--TDQSPELMKFITTRYIRIRLQGMHSTANQ 370
            :.|.:  |:::||...||..|.:..|.|:.||.|  .::||.|.:::|:..:.|.|..:::..  
  Rat   192 EDERVAFCTSEFSDISPLNGGNVAFSTLEGRPSAYNFEESPVLQEWVTSTDLLISLDRLNTFG-- 254

  Fly   371 DNSLDWLLDSPSLEKHSFYSLSQLKVSARLDCNGHANRSHESPDDP-LMQCICQHNTCGAQCEQC 434
                |.:...|.:.:..:|::|...|..|..|||||:..  .|::. .:.|.|||||.|..||:|
  Rat   255 ----DDIFKDPRVLQSYYYAVSDFSVGGRCKCNGHASAC--GPNEAGQLACHCQHNTTGVDCERC 313

  Fly   435 CPLFQDRPYQMG-----GECEICQCYGHAESCTYDPFLDK-----GICQSCSNNTAGIECEFCEM 489
            .|.|||||:..|     .||..|.|.||:|.||:|..|.:     |.||.|.::|||..||.||.
  Rat   314 LPFFQDRPWARGTAEDANECLPCNCSGHSEECTFDRELYRSTGHGGHCQRCRDHTAGPHCEHCEK 378

  Fly   490 GFYRELDAPLTDPCLPCSCNPARSTGGCQSDGGSCNCLEGFQGKNCEECAPGYYG---DDCKRCE 551
            .:||.  .|.| ||.||.|:||.|......:.|:|.|.....|..|:.|.||::.   ..|:.|.
  Rat   379 NYYRW--DPKT-PCQPCDCHPAGSLSLQCDNSGTCPCKLTVTGWKCDRCLPGFHSLSEGGCRPCT 440

  Fly   552 CDERGSLGSTGSCSGVCQCKLNVEGSTCSECAPGYFDLSAENAEGCTSCWCSGVSQTCHSAKLQT 616
            |:..||||:....||.|.||.||||..|..|.||.|:|...|..||:||:|.|.|:.|..|.   
  Rat   441 CNVAGSLGTCDPRSGNCPCKENVEGGLCDRCRPGTFNLQPHNPAGCSSCFCYGHSKVCAPAS--- 502

  Fly   617 LAFETLNDWKITDIQRVKPISIPVDAETNRLIFANELDEVEAIYWQASLGYLGNRLTSYGSRLQL 681
             .|:                     ....|..|.:..|.     |||       |.|....|   
  Rat   503 -GFQ---------------------EHHIRSDFRHGADG-----WQA-------RSTEVSER--- 530

  Fly   682 VLSWD---VIRGDRSGKPTTGPNVILVGKNGLKIAFGDESLDGLGINLNVTLTEVGWYHVPPTVV 743
            .|.|.   ::.|.|.|:..:.|...|          ||:.| ..|..|.:||      .|||...
  Rat   531 PLQWSQSGILLGLRGGEELSAPEKFL----------GDQRL-SYGQPLILTL------QVPPGGS 578

  Fly   744 DIKTRLRRTEGG--------------DYHGESVTRSQFLSVLVSLDAVLIRAAFHTDQGETSLER 794
            ....:||....|              |.......:.|||....|.:|.....|||..:..::|..
  Rat   579 PPPMQLRLEGAGLSLALKPSNLPSSQDTRQPGRVQLQFLLQETSEEAEPPLPAFHFQRLLSNLTT 643

  Fly   795 AVIYSGGVELG---------------------GKSSSQVEQCLCPAGYTGLSCEGCAFGFKRIYE 838
            ..|::.|..||                     ...:|.||.||||.||||..||.||.|:||...
  Rat   644 LSIWTSGQGLGHSGHVLLCEVHLTSARPQRGLAPPASWVETCLCPQGYTGQFCEFCALGYKREIP 708

  Fly   839 NTSDHQILSKCIPCPCNGHSNSCDLQSGNCGDCMHNTFGDRCERCQLGYYGNPLQGTPNDCKRCA 903
            :...:   :.||||.||.| .:||..:|.| .|.|:|.|..||||..|:|||...|..:||:.|.
  Rat   709 HGGPY---TNCIPCTCNQH-GTCDPNTGIC-LCGHHTEGPSCERCMPGFYGNAFSGHADDCQPCP 768

  Fly   904 CPLSEDSNNFSPSCQLKSYNYMDLNPQFELIEHAEYICTQCPEGYTGDHCQVCDDGYFGNP---- 964
            ||       ...:|.             .:.|..:.:||.||.|..|..|:.|:||:||:|    
  Rat   769 CP-------GQSACT-------------TIPESRDVVCTHCPPGQRGRRCESCEDGFFGDPLGLS 813

  Fly   965 --RQPGSSCQRCDC-------AGGPCNVTTGECITCRGNTEGWHCERCKLGYWGDPAVGCDPCHC 1020
              .||   |:||.|       |.|.|:..:|.|:.|..||.|.|||.|:.|::|. |:...|.. 
  Rat   814 GAPQP---CRRCQCSRNVDLNAVGNCDPHSGRCLRCLHNTTGAHCEHCQEGFYGS-ALATRPAD- 873

  Fly  1021 HTEGSESGLCDSTDGQCLCKPRYAGQKCDECDVGYANVELRCPSCNCDPLGSLVQDRCDPHTGQC 1085
                                                    :|..|:|||.||..|..|:|     
  Rat   874 ----------------------------------------KCAPCSCDPRGSSSQKTCNP----- 893

  Fly  1086 HCKEGVMGAKCHECQDGYFGMNAVAYRMDDLAALRQNSDSDDDEWELVPDTEDPNSESTVACEEC 1150
                                                                             
  Rat   894 ----------------------------------------------------------------- 893

  Fly  1151 HCSSVGSLSSDCDKRTGQCACLANVTGRRCDKCRPGHWNLTAGEGCRDCRCDPHGSRGHECNPWT 1215
                          .|||||||..||||.|.:|.||.::|..|.||:.|:|.|.||..::|:|.|
  Rat   894 --------------ATGQCACLPYVTGRDCSRCSPGFYDLQPGRGCQSCKCHPVGSLENKCHPKT 944

  Fly  1216 GQCDCKIGVGGQHCNECTEGFFGFSTEGCQRCSACRSEGQVCDPHNGRCICPKFTRGLGCGQCVP 1280
            |||.|:.||.||.|:.|..||||||.:                                      
  Rat   945 GQCPCRPGVTGQACDRCQLGFFGFSIK-------------------------------------- 971

  Fly  1281 GTWGWQARLGCRECECDHIGSIGQQCSTGDGQCQCREGYSGRKCDTCAIGYFGYPECRRCGCDAE 1345
                     |||:|.|..:|:...||.. :..|.||.|:.|.|||.|                 :
  Rat   972 ---------GCRDCRCSPLGAASPQCHE-NSTCVCRPGFVGYKCDRC-----------------Q 1009

  Fly  1346 GSFTQADGSIACDSNGQCP-CKSLV----VGLKCDTCMQSTF--GLSAQNPEGCTRCFCFGRSGE 1403
            .:|...||...|.   :|| |.:||    ..||....:...:  |....:|.|.....    .||
  Rat  1010 DNFFLVDGDTGCQ---ECPTCYALVKEEAAKLKTRLMLMEGWLQGSECGSPWGPLDIL----QGE 1067

  Fly  1404 CEQSDLSWGHIRMAESRNLSVQQI--RPHSVPSSDYEYIVVVQME------------------GS 1448
            ..:.|:..||....|:|...::|:  ...||.:: :|.:.|::..                  |.
  Rat  1068 APRGDVYQGHHLFQEARGTFLEQMVGLEESVKAT-WEQLQVLRGNAHCAQAGAQKTCNQLAELGE 1131

  Fly  1449 SFHREDAEIQR----------MNDLSLVPKSTGNVSIGAY 1478
            :....:.|:.|          :.:.|..|.:.|.::..||
  Rat  1132 TLRSSEEEVLRAASALSFLANLQEGSSAPTNWGRLASEAY 1171

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
wbNP_723870.1 Laminin_N 153..398 CDD:459653 69/254 (27%)
EGF_Lam 401..450 CDD:238012 24/54 (44%)
EGF_Lam 505..552 CDD:238012 16/49 (33%)
Laminin_EGF 550..597 CDD:395007 22/46 (48%)
Laminin_B 660..813 CDD:459652 41/190 (22%)
EGF_Lam 851..900 CDD:238012 23/48 (48%)
Laminin_EGF <943..971 CDD:395007 13/33 (39%)
Laminin_EGF 974..1018 CDD:395007 18/50 (36%)
EGF_Lam 1017..1065 CDD:238012 2/47 (4%)
Laminin_EGF 1065..>1105 CDD:395007 9/39 (23%)
EGF_Lam 1150..1197 CDD:238012 18/46 (39%)
Laminin_EGF 1199..1247 CDD:395007 24/47 (51%)
EGF_Lam 1247..1292 CDD:238012 1/44 (2%)
Laminin_EGF 1294..1342 CDD:395007 14/47 (30%)
Laminin_EGF 1340..1392 CDD:395007 13/58 (22%)
Laminin_B 1486..1626 CDD:459652
EGF_Lam 1669..1716 CDD:238012
Laminin_EGF 1718..1767 CDD:395007
EGF_Lam 1772..1819 CDD:238012
YhaN <1907..2141 CDD:443752
SMC_prok_B <2123..>2390 CDD:274008
Laminin_II 2279..2400 CDD:368703
LamG 2399..>2492 CDD:473984
LamG 2586..2753 CDD:238058
Laminin_G_2 2804..2944 CDD:460494
LamG 3018..3167 CDD:238058
LamG 3192..3347 CDD:238058
Lamc3NP_001101300.1 Laminin_N 44..278 CDD:459653 70/269 (26%)
EGF_Lam 279..326 CDD:238012 23/48 (48%)
Laminin_EGF 336..392 CDD:395007 26/58 (45%)
EGF_Lam 391..437 CDD:238012 14/45 (31%)
Laminin_EGF 439..486 CDD:395007 22/46 (48%)
Laminin_B 549..683 CDD:459652 30/150 (20%)
EGF_Lam 718..765 CDD:238012 23/48 (48%)
EGF_Lam 766..814 CDD:238012 18/67 (27%)
EGF_Lam 821..864 CDD:238012 17/42 (40%)
Laminin_EGF 878..925 CDD:395007 26/130 (20%)
Laminin_EGF 928..976 CDD:395007 27/94 (29%)
Laminin_EGF 976..1022 CDD:395007 17/63 (27%)
SMC_prok_B <1086..>1574 CDD:274008 13/87 (15%)
Blue background indicates that the domain is not in the aligned region.

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