DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment wb and Lamb3

DIOPT Version :10

Sequence 1:NP_723870.1 Gene:wb / 43946 FlyBaseID:FBgn0261563 Length:3375 Species:Drosophila melanogaster
Sequence 2:NP_001094311.1 Gene:Lamb3 / 305078 RGDID:1562668 Length:1172 Species:Rattus norvegicus


Alignment Length:1313 Identity:271/1313 - (20%)
Similarity:409/1313 - (31%) Gaps:500/1313 - (38%)


- Green bases have known domain annotations that are detailed below.


  Fly   852 CPCNGHSNSC------------DLQSGNCGDCMHNTFGDRCERCQLGYYGNPLQGTPNDCKRCAC 904
            |.|:||::.|            .:|..:...|.|||.|..|:||...|...|             
  Rat   251 CFCHGHADRCAPNPGGPTGSTTAVQVNDVCVCQHNTAGPNCDRCAPFYNNRP------------- 302

  Fly   905 PLSEDSNNFSPSCQLKSYNYMDLNPQFELIEHAEYICTQCPEGYTGDHCQVCDDGYFGNPRQPGS 969
                    :.|:                             ||                  |...
  Rat   303 --------WRPA-----------------------------EG------------------QDIH 312

  Fly   970 SCQRCDCAGGPCNVTTGECITCRGNTEGWHCERCKLGYWGDPAVGCDPCHCHTEGSESGLCDSTD 1034
            .||||||.|                    |.|.|..    ||||     ...::|:..|:||:  
  Rat   313 ECQRCDCNG--------------------HSETCHF----DPAV-----FAASQGTSGGVCDN-- 346

  Fly  1035 GQCLCKPRYAGQKCDECDVGY-------ANVELRCPSCNCDPLGSLVQDRCDPHTGQCHCKEGVM 1092
                |:....|:.|:.|.:.|       |.:...|..|.|||.|::....||..||||.||:.|.
  Rat   347 ----CQDHTEGKNCERCQLHYFRNRRPGAPIHETCIPCECDPDGAVPGAPCDRLTGQCVCKDHVQ 407

  Fly  1093 GAKCHECQDGYFGMNAVAYRMDDLAALRQNSDSDDDEWELVPDTEDPNSESTVACEECHCSSVGS 1157
            |.:|..|:.|:.|:...                            :|.     .|..|.||.:|:
  Rat   408 GERCDLCKPGFTGLTFA----------------------------NPQ-----GCHPCDCSILGT 439

  Fly  1158 LSS-DCDKRTGQCACLANVTGRRCDKCRPGHWNLTAGEGCRDCRCDPHGSRGHECNPWTGQCDCK 1221
            ... .|::.||:|.||.||.|.:||:|.|.||.|.:|.||..|.|||..|...:||.:||||.|:
  Rat   440 RQDMPCEEETGRCLCLPNVVGPKCDQCAPSHWKLASGRGCEPCACDPRNSLSSQCNQFTGQCPCR 504

  Fly  1222 IGVGGQHCNECTEGFFGFSTEGCQRCSACRSEGQVCDPHNGRCICPKFTRGLGCGQCVPGTWGWQ 1286
            .|.||..|:.                :|.|.             ||..|.|             .
  Rat   505 EGFGGLTCSS----------------AAIRQ-------------CPDRTHG-------------D 527

  Fly  1287 ARLGCRECECDHIGSIGQQCSTGDGQCQCREGYSGRKCDTCAIGYFG-YPECRRCGCDAEGSFTQ 1350
            ...|||.|:||..|:.|..|....|:|.||.|.:|.:||.|..||.. ||.|             
  Rat   528 VATGCRACDCDFRGTEGPGCDKTSGRCLCRPGLTGPRCDQCQRGYCDRYPVC------------- 579

  Fly  1351 ADGSIACDSNGQCPCKSLVVGLKCDTCMQS---TFGLSAQNPEGCTRCFCFGRSGECEQSDLSWG 1412
                :||.|..|.          .||.:|.   ..|......||      .|.....|...|:  
  Rat   580 ----VACHSCFQA----------YDTDLQEQAWRLGSLRNTTEG------LGTGTGLEDRGLA-- 622

  Fly  1413 HIRMAESRNLSVQQIRPHSVPSSDYEYIVVVQMEGSSFHREDAEIQRMNDLSLVPKSTGNVSIGA 1477
             .|:.:::: .::|||               |:.|.:...|....|..|.:..:.::...:    
  Rat   623 -SRLLDAKS-KIEQIR---------------QILGGTSVTERDVAQVANAILSIRRTLQGL---- 666

  Fly  1478 YGQFYHPLYFQLPPQFYGDRTSSYGGFLYFTLITEGAHKPLERNILGQYPLVQLHAHSKLLLDF- 1541
                  ||  .||.:   :...|:.|.|          ..|:|:.            ::|||.: 
  Rat   667 ------PL--DLPLE---EEMESFSGDL----------GNLDRSF------------NRLLLMYR 698

  Fly  1542 YEYEEFEYSLNVTHRVPLHESFWKYHHTSQAV----DRNTLMAALQNIRHIFIRAFAFADFQEVV 1602
            .:.|:||...:|............|..:|:|.    |.::|::.|::.|            :|| 
  Rat   699 SKKEQFEKLSSVDPSGAFRMLTMAYEQSSRAAQQVSDSSSLLSQLRDSR------------REV- 750

  Fly  1603 LQNVHMDAAIYIKGSTNLIAKGVERCKCPKRFDGLSCQDPGRSFYRWRNTTIVESVFIEDLIGRA 1667
             :.:.........|...|:|..:|....|..                       :..|..|.|.:
  Rat   751 -EGLERQTGEGGAGGAQLMALRLEMASLPDL-----------------------TPTINKLCGGS 791

  Fly  1668 APCHCNGRSSDCDRETG-VCQNCRGNTGGDHCHQCAEGFYGDPNSPHGCQACPCPETNRNFARGC 1731
            ....|.  ..||   .| :|....|...|.||                              || 
  Rat   792 RQTACT--PGDC---PGLLCPQDNGTACGSHC------------------------------RG- 820

  Fly  1732 NVWDGEVSCVCKPGYTGRLCERCQAGYFGDPMRYPNTTCQ------------PCNCHPDGIQTEG 1784
                      ..|...|.|   ..||...:.:|..||..|            ......|..:.| 
  Rat   821 ----------ALPRARGAL---HMAGQVAEQLRSFNTQLQQTRQMIRAAEEAASKVQSDAQRLE- 871

  Fly  1785 CDVETGRCYCREGVTGLKCDKCQAERHHLVD---NGCKI-------------CDNCTLLLLDYME 1833
            ..|.|.|....|.|...:. ..|..|..|.|   :...|             .|:.|:|      
  Rat   872 TQVSTSRLQMEEDVRRTRL-LIQQVRGFLTDPHTDAATIQQVSEAVLALWLPTDSATVL------ 929

  Fly  1834 LVGNKLRRGMHNMDLTGIPAPYRKLSEYESAYEKWNGRHWDFSQTKRRLQDYDSADILKLEAHAE 1898
                                  ||:.|.:....:........||||:     |.|...:|:|.||
  Rat   930 ----------------------RKMKEIQDIAARLPNVDLVLSQTKQ-----DIARARRLQAEAE 967

  Fly  1899 NLKFQSRKAVATIGKREFAIKSMREDAVTQQHSVGLLRSEILQTLSD-LHGYGKSAHYLSLPTAL 1962
              |.:||..|.. |:.:..:.::|:..|.            ||...| :.|.|:|...:.     
  Rat   968 --KARSRAHVVE-GQVDDVVGNLRQGTVA------------LQEAQDTMQGTGRSLRLIQ----- 1012

  Fly  1963 KQARFYLQAIREHDQMVQGIRSTNDCAWKHFYAMGNASDASFDESGRLEMLWRDLNQTNHRVVDM 2027
            ::.....|.:...:::|:|::......|.                               ||.::
  Rat  1013 ERVTEVQQVLVPAERLVKGMKEQMSGFWA-------------------------------RVKEL 1046

  Fly  2028 RLQVDRVQEVENEAEDVLEHVRNLSIRVGESHQELDELNQRISDHLDPGYL--EQGEGLLRLTVQ 2090
            |.|....|....:|:.:.|...|.::...|..:.|.:....:.|.|....:  |||..:|.:..:
  Rat  1047 RHQAQEEQAQAMKAQQLAEGASNQAMNAQEGFERLKQRYTELKDRLGQSSMLGEQGNRILSIKAE 1111

  Fly  2091 RQIMLNGHLNQLD 2103
            .:.:....:..:|
  Rat  1112 AEELFGETMEMMD 1124

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
wbNP_723870.1 Laminin_N 153..398 CDD:459653
EGF_Lam 401..450 CDD:238012
EGF_Lam 505..552 CDD:238012
Laminin_EGF 550..597 CDD:395007
Laminin_B 660..813 CDD:459652
EGF_Lam 851..900 CDD:238012 16/59 (27%)
Laminin_EGF <943..971 CDD:395007 3/27 (11%)
Laminin_EGF 974..1018 CDD:395007 11/43 (26%)
EGF_Lam 1017..1065 CDD:238012 11/54 (20%)
Laminin_EGF 1065..>1105 CDD:395007 18/39 (46%)
EGF_Lam 1150..1197 CDD:238012 22/47 (47%)
Laminin_EGF 1199..1247 CDD:395007 16/47 (34%)
EGF_Lam 1247..1292 CDD:238012 7/44 (16%)
Laminin_EGF 1294..1342 CDD:395007 20/48 (42%)
Laminin_EGF 1340..1392 CDD:395007 9/54 (17%)
Laminin_B 1486..1626 CDD:459652 26/144 (18%)
EGF_Lam 1669..1716 CDD:238012 9/47 (19%)
Laminin_EGF 1718..1767 CDD:395007 8/48 (17%)
EGF_Lam 1772..1819 CDD:238012 11/49 (22%)
YhaN <1907..2141 CDD:443752 31/200 (16%)
SMC_prok_B <2123..>2390 CDD:274008
Laminin_II 2279..2400 CDD:368703
LamG 2399..>2492 CDD:473984
LamG 2586..2753 CDD:238058
Laminin_G_2 2804..2944 CDD:460494
LamG 3018..3167 CDD:238058
LamG 3192..3347 CDD:238058
Lamb3NP_001094311.1 Laminin_N 21..249 CDD:470680
EGF_Lam 250..305 CDD:238012 16/74 (22%)
Laminin_EGF 317..367 CDD:395007 20/84 (24%)
Laminin_EGF 380..429 CDD:395007 20/81 (25%)
EGF_Lam 431..480 CDD:238012 22/48 (46%)
Laminin_EGF 482..535 CDD:395007 25/94 (27%)
EGF_Lam 535..572 CDD:214543 15/36 (42%)
SMC_prok_B <834..1115 CDD:274008 65/366 (18%)
cc_LAMB_C 1102..1172 CDD:424069 3/23 (13%)
Blue background indicates that the domain is not in the aligned region.

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