DRSC/TRiP Functional Genomics Resources

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Protein Alignment wb and lamc1

DIOPT Version :9

Sequence 1:NP_723870.1 Gene:wb / 43946 FlyBaseID:FBgn0261563 Length:3375 Species:Drosophila melanogaster
Sequence 2:NP_775384.1 Gene:lamc1 / 286832 ZFINID:ZDB-GENE-021226-3 Length:1593 Species:Danio rerio


Alignment Length:1236 Identity:361/1236 - (29%)
Similarity:523/1236 - (42%) Gaps:306/1236 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly   155 PPLFNVVPRAQISVNATCGQNGAEEYCKQVG----AKPCGICNAHSSDRAKQRSIQSLISSGSGS 215
            |...|....|.:....||| :..||:|.|.|    .|.|.|||| :..|....::..       :
Zfish    36 PEFVNAAFNATVVATNTCG-SPPEEFCVQTGVTGVTKSCHICNA-ADPRLHHGAVYL-------T 91

  Fly   216 GSGSGFEEGWWQSPTLQGGRQF-EYVTILLDLKQTFQIFSVWLKSANSPRPASWILEK--SLDGI 277
            ......:..||||.|:..|.|: ..:.:.|.|.::|.|..|.||...| ||.|:.:.|  |.|| 
Zfish    92 DYNQPVQPTWWQSQTMLAGIQYPNSINLTLHLGKSFDITYVRLKFHTS-RPESFAIYKRSSEDG- 154

  Fly   278 NFEPWQYFGLSDADCQRRWNLSGQNGKYVFQNDTEIICSTQFSKPGPLENGVLHASLLKNRPGA- 341
            .:.|:||:   ...|::.::.:.:......:::.:.:|:.:||...||..|.:..|.|:.||.| 
Zfish   155 PWTPYQYY---SGSCEKTYSKNNRGFIRTGEDEQQALCTDEFSDISPLYGGNVAFSTLEGRPSAY 216

  Fly   342 -TDQSPELMKFITTRYIRIRLQGMHSTANQDNSL-DWLLDSPSLEKHSFYSLSQLKVSARLDCNG 404
             .|.||.|..::|...||:       |.|:.|:. |.:.:.|.:.|..:|::|...|..|..|||
Zfish   217 NFDNSPVLQDWVTATDIRV-------TLNRLNTFGDEVFNDPKVLKSYYYAISDFAVGGRCKCNG 274

  Fly   405 HANRSHESPDDPLMQCICQHNTCGAQCEQCCPLFQDRPYQMG-----GECEICQCYGHAESCTYD 464
            ||:...::....|: |.|:|||.||.|..|.|.:.|||::..     .||..|.|.|.:..|.:|
Zfish   275 HASECVKNEYSKLV-CNCKHNTEGADCNVCKPFYNDRPWRRATAENPNECLPCNCNGKSAECYFD 338

  Fly   465 PFLDK-----GICQSCSNNTAGIECEFCEMGFYRELDAPLTDPCLPCSCNPARSTGGCQSDGGSC 524
            |.|.:     |.|::|::||.|.:||.|...:|||...   ..||.|.|||..|......:.|.|
Zfish   339 PELYRATGHGGHCRNCADNTDGPKCERCLANYYREASG---QRCLSCGCNPVGSLSTQCDNTGRC 400

  Fly   525 NCLEGFQGKNCEECAPGYYG---DDCKRCECDERGSLGSTGSCSGVCQCKLNVEGSTCSECAPGY 586
            :|..|..|..|:.|.|||:.   ..|:.|.|:..||.......:|.||||.||:|..|..|..||
Zfish   401 SCKPGVMGDKCDRCQPGYHSLSEAGCRPCSCNPAGSTQECDVQTGRCQCKENVDGFNCDRCKLGY 465

  Fly   587 FDLSAENAEGCTSCWCSGVSQTCHSA------KLQTLAFETLND-WKITDIQRVKPISIPVDAET 644
            |:|..:|.:|||.|:|...|..|.||      |: |..|:..:: ||  ..|| ...|:||....
Zfish   466 FNLDPQNPQGCTPCFCFQHSTVCESADGYSVHKI-TSTFDRDDEGWK--GKQR-DDSSVPVQWSP 526

  Fly   645 NRLIFANELDEVEAIYWQASLGYLGNRLTSYGSRLQLVLSWDVIRGDRSGKPTTGPNVILVGKNG 709
            :....:...::...||:.|...:|.|:|.|||.  .|.|::.:.|.|                  
Zfish   527 SSGEISLISEDYFPIYFVAPDKFLHNQLLSYGQ--NLTLNFRIQRHD------------------ 571

  Fly   710 LKIAFGDESLDGLGINLNVTLTEVGWYHVPPTVVDIKTRLRRTEGGDYHGE-SVTRSQFLSVLVS 773
            .:::..|..|:|.|:.:.|.|...|..:..........||..|.  ||... ::..:.|..:|.:
Zfish   572 ARLSAEDVVLEGSGLRVAVPLIAQGNSYPGEETQTFVFRLHDTT--DYPWRPTIKHADFQKLLYN 634

  Fly   774 LDAVLIRAAFHTDQGETSLERAVIYSGGVEL------GGKSSSQVEQCLCPAGYTGLSCEGCAFG 832
            |.:::||..:..        ::..|...|.|      .|..:..||:|.||.||.|..||.|..|
Zfish   635 LTSIMIRGTYSA--------QSAGYLDNVSLVTARRGPGTPARWVEKCTCPQGYLGQHCEQCDQG 691

  Fly   833 FKRIYENTSDHQILSKCIPCPCNGHSNSCDLQSGNCGDCMHNTFGDRCERCQLGYYGNPLQGTPN 897
            |:|   :..:.:..|.|..|.|||||::||.::|.| :|.|||.|..||||:.|:||:...|:.:
Zfish   692 FRR---SRPELRRFSTCERCNCNGHSDTCDPETGMC-NCQHNTAGLSCERCKDGFYGDSTVGSSS 752

  Fly   898 DCKRCACPLSEDSNNFSPSCQLKSYNYMDLNPQFELIEHAEYICTQCPEGYTGDHCQVCDDGYFG 962
            |||.|.||.       ..:|.:             :.:..|.:||.||.|.||..|::||||:||
Zfish   753 DCKACPCPA-------GATCAV-------------VPKTNEVVCTNCPTGTTGKRCELCDDGFFG 797

  Fly   963 NP---RQPGSSCQRCDC-------AGGPCNVTTGECITCRGNTEGWHCERCKLGYWGDPAVGCDP 1017
            :|   :.|..:|:.|.|       |.|.||..:|||:.|..||.|..|:|||.|::||...    
Zfish   798 DPLGEKGPVRACRACSCNNNIEPNAVGNCNRESGECLKCIYNTAGVFCDRCKQGFYGDARA---- 858

  Fly  1018 CHCHTEGSESGLCDSTDGQCLCKPRYAGQKCDECDVGYANVELRCPSCNCDPLGSLVQDRCDPHT 1082
                                                  |||..:|..|.|.|.|::  ||     
Zfish   859 --------------------------------------ANVADKCKPCKCSPYGTV--DR----- 878

  Fly  1083 GQCHCKEGVMGAKCHECQDGYFGMNAVAYRMDDLAALRQNSDSDDDEWELVPDTEDPNSESTVAC 1147
                                                                             
Zfish   879 ----------------------------------------------------------------- 878

  Fly  1148 EECHCSSVGSLSSDCDKRTGQCACLANVTGRRCDKCRPGHWNLTAGEGCRDCRCDPHGSRGHECN 1212
             :..||.|          ||||.||.:|..|.|..|..|.:||.:|:||..|.|:|.||...:|:
Zfish   879 -QTACSQV----------TGQCPCLPHVINRDCGACELGFYNLQSGKGCERCNCNPIGSTNGQCD 932

  Fly  1213 PWTGQCDCKIGVGGQHCNECTEGFFGFSTEGCQRCSACRSEGQVCDPHNGRCICPKFTRGLGCGQ 1277
            ..:|||:|:.||.||||..|...|||||:.                                   
Zfish   933 IVSGQCECQPGVTGQHCERCEVNFFGFSSS----------------------------------- 962

  Fly  1278 CVPGTWGWQARLGCRECECDHIGSIGQQCSTGDGQCQCREGYSGRKCDTCAIGYF---GYPECRR 1339
                        ||:.|:||..||...||.. ||:|.||.|:.|.:||.|...||   ..|.|::
Zfish   963 ------------GCKPCDCDPEGSESAQCKE-DGRCHCRPGFVGSRCDMCEENYFYNRSTPGCQQ 1014

  Fly  1340 C 1340
            |
Zfish  1015 C 1015

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
wbNP_723870.1 Laminin_N 164..396 CDD:278484 68/241 (28%)
EGF_Lam 401..450 CDD:238012 20/53 (38%)
TNFRSF <407..507 CDD:304602 37/109 (34%)
EGF_Lam 505..552 CDD:238012 17/49 (35%)
Laminin_EGF 550..597 CDD:278482 19/46 (41%)
Laminin_B 660..798 CDD:278481 29/138 (21%)
EGF_Lam 851..900 CDD:238012 24/48 (50%)
Laminin_EGF <943..971 CDD:278482 14/30 (47%)
VSP 953..1414 CDD:146106 105/401 (26%)
Laminin_EGF 974..1018 CDD:278482 20/50 (40%)
EGF_Lam 1017..1065 CDD:238012 4/47 (9%)
Laminin_EGF 1065..>1105 CDD:278482 6/39 (15%)
EGF_Lam 1150..1197 CDD:238012 18/46 (39%)
Laminin_EGF 1199..1247 CDD:278482 22/47 (47%)
EGF_Lam 1247..1292 CDD:238012 1/44 (2%)
Laminin_EGF 1294..1342 CDD:278482 22/50 (44%)
Laminin_EGF 1340..1392 CDD:278482 1/1 (100%)
Laminin_B 1486..1611 CDD:278481
EGF_Lam 1669..1716 CDD:238012
Laminin_EGF 1718..1767 CDD:278482
EGF_Lam 1772..1819 CDD:238012
CrfC <1933..2267 CDD:223771
Laminin_II 2277..2400 CDD:283628
LamG 2399..>2492 CDD:304605
Laminin_G_2 2616..2755 CDD:280389
Laminin_G_2 2804..2944 CDD:280389
Laminin_G_2 3038..3169 CDD:280389
LamG 3192..3347 CDD:238058
lamc1NP_775384.1 LamNT 30..268 CDD:214532 71/252 (28%)
EGF_Lam 269..314 CDD:238012 20/45 (44%)
Laminin_EGF 326..379 CDD:278482 19/55 (35%)
Laminin_EGF 382..429 CDD:278482 16/46 (35%)
Laminin_EGF 429..476 CDD:278482 19/46 (41%)
Laminin_B 537..662 CDD:295357 33/154 (21%)
EGF_Lam 707..749 CDD:238012 22/42 (52%)
Laminin_EGF 812..856 CDD:278482 19/43 (44%)
EGF_Lam 867..917 CDD:238012 24/132 (18%)
EGF_Lam 919..964 CDD:214543 22/91 (24%)
Laminin_EGF 967..1013 CDD:278482 20/46 (43%)
Domain II and I. /evidence=ECO:0000250 1014..1593 1/2 (50%)
SPEC 1033..1233 CDD:295325
Taxilin 1035..1308 CDD:286771
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1836
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
32.810

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