DRSC/TRiP Functional Genomics Resources

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Protein Alignment wb and Lamc2

DIOPT Version :10

Sequence 1:NP_723870.1 Gene:wb / 43946 FlyBaseID:FBgn0261563 Length:3375 Species:Drosophila melanogaster
Sequence 2:NP_001094110.1 Gene:Lamc2 / 192362 RGDID:621053 Length:1192 Species:Rattus norvegicus


Alignment Length:672 Identity:220/672 - (32%)
Similarity:308/672 - (45%) Gaps:139/672 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly   450 EICQCYGHAESCTYDPFLDKGI-----CQSCSNNTAGIECEFCEMGFYRELDAPLTDPCLPCSCN 509
            |:|.|.|.:..|.:|..|.:..     |.:|::||||:.||.|..||||:.|   .|.||||:|:
  Rat    26 EVCDCNGKSRQCVFDQELHRQTGNGFRCLNCNDNTAGVHCERCREGFYRQRD---RDRCLPCNCH 87

  Fly   510 PARSTG-GCQSDGGSCNCLEGFQGKNCEECAPGYY---GDDCKR--------CECDERGSLGSTG 562
            ...|.| || .:.|.|.|..|..|:.|:.|.||::   ...|.|        |:||   ..|.:|
  Rat    88 SKGSLGAGC-DNSGQCRCKPGVVGQRCDRCQPGFHMLTDAGCTRDQRQLDSKCDCD---PAGISG 148

  Fly   563 SC-SGVCQCKLNVEGSTCSECAPGYFDLSAENAEGCTSCWCSGVSQTCHSA------KLQTLAFE 620
            .| ||.|.||..|.|..|..|..||:.|...|.||||.|:|.|.|.:||::      |:.:...:
  Rat   149 PCDSGRCVCKPAVTGERCDRCRAGYYHLDRANPEGCTQCFCYGHSDSCHTSADFSVHKITSTFNQ 213

  Fly   621 TLNDWKITDIQR--------VKPISIPVDAETNRLIFANELDEVEAIYWQASLGYLGNRLTSYGS 677
            ..:.||.  :||        ..|....|.:...|         .:.:|:.|...:|||:..|||.
  Rat   214 DEDGWKA--VQRNWAPAKLHWSPRHQDVFSSARR---------SDPVYFVAPAKFLGNQQVSYGQ 267

  Fly   678 RLQLVLSWDVIRGDRSGKPTTGPNVILVGKNGLKIAFGDESLDGLGINLNVTLTEVGWYHVPPTV 742
            .    ||:| .|.||.|:..:..:||               |:|.|:.:...|...|  ...|..
  Rat   268 S----LSFD-YRVDRGGRHPSAYDVI---------------LEGAGLQIRAPLMPPG--KTLPCG 310

  Fly   743 VDIKTRLRRTEGGDYH-GESVTRSQFLSVLVSLDAVLIRAAFHTDQGETS---LERAVIYSGGVE 803
            :......|..|....| ...::..::..:|.:|.|:||||.:    ||.|   ::...:.|.. .
  Rat   311 ITKTYTFRLNEHPSSHWSPQLSYFEYRRLLRNLTALLIRATY----GEYSTGYIDNVTLISAR-P 370

  Fly   804 LGGKSSSQVEQCLCPAGYTGLSCEGCAFGFKRIYENTSDHQILSKCIPCPCNGHSNSCDLQSGNC 868
            :.|..:..||:|:|||||.|..|:.||.|:||   :::.......|:||.|.| ..:||..:|:|
  Rat   371 VSGAPAPWVERCVCPAGYKGQFCQECASGYKR---DSARLGPFGTCVPCNCQG-GGACDPDTGDC 431

  Fly   869 GDCMHNTFGD-----RCERCQLGYYGNPLQGTPNDCKRCACPLSEDSNNFSPSCQLKSYNYMDLN 928
            ..      ||     .|..|.:|:|.:|  ..|..||.|.|     .|.||.|          :.
  Rat   432 YS------GDENPDIECADCPIGFYNDP--HDPRSCKPCPC-----HNGFSCS----------VM 473

  Fly   929 PQFELIEHAEYICTQCPEGYTGDHCQVCDDGYFGNP---RQPGSSCQRCDC-------AGGPCNV 983
            |:.|     |.:|..||.|.||..|::|.||:||:|   |.|...||||.|       |.|.|:.
  Rat   474 PETE-----EVVCNNCPPGVTGARCELCADGFFGDPFGERGPVRPCQRCQCNNNVDPSASGNCDQ 533

  Fly   984 TTGECITCRGNTEGWHCERCKLGYWGD-----PAVGCDPCHCHTEGSESGLCDSTDGQCLCKPRY 1043
            .||.|:.|..||.|.:|::||.||:||     ||..|..|:|:..|||.|.|.| ||.|:|||.:
  Rat   534 LTGRCLKCIYNTAGIYCDQCKAGYFGDPLAPNPADKCRACNCNPVGSEPGECRS-DGSCVCKPGF 597

  Fly  1044 AGQKCDECDVGYANVELRCPSC 1065
            .|..|     .:|.....||:|
  Rat   598 GGLNC-----AHAAALTSCPAC 614

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
wbNP_723870.1 Laminin_N 153..398 CDD:459653
EGF_Lam 401..450 CDD:238012 220/672 (33%)
EGF_Lam 505..552 CDD:238012 19/58 (33%)
Laminin_EGF 550..597 CDD:395007 20/47 (43%)
Laminin_B 660..813 CDD:459652 38/156 (24%)
EGF_Lam 851..900 CDD:238012 16/53 (30%)
Laminin_EGF <943..971 CDD:395007 14/30 (47%)
Laminin_EGF 974..1018 CDD:395007 22/55 (40%)
EGF_Lam 1017..1065 CDD:238012 19/47 (40%)
Laminin_EGF 1065..>1105 CDD:395007 1/1 (100%)
EGF_Lam 1150..1197 CDD:238012
Laminin_EGF 1199..1247 CDD:395007
EGF_Lam 1247..1292 CDD:238012
Laminin_EGF 1294..1342 CDD:395007
Laminin_EGF 1340..1392 CDD:395007
Laminin_B 1486..1626 CDD:459652
EGF_Lam 1669..1716 CDD:238012
Laminin_EGF 1718..1767 CDD:395007
EGF_Lam 1772..1819 CDD:238012
YhaN <1907..2141 CDD:443752
SMC_prok_B <2123..>2390 CDD:274008
Laminin_II 2279..2400 CDD:368703
LamG 2399..>2492 CDD:473984
LamG 2586..2753 CDD:238058
Laminin_G_2 2804..2944 CDD:460494
LamG 3018..3167 CDD:238058
LamG 3192..3347 CDD:238058
Lamc2NP_001094110.1 Laminin_EGF 28..86 CDD:395007 25/60 (42%)
EGF_Lam 83..127 CDD:238012 16/44 (36%)
Laminin_EGF 139..184 CDD:395007 20/47 (43%)
LamB 245..370 CDD:214597 38/160 (24%)
EGF_Lam 461..509 CDD:238012 22/67 (33%)
Laminin_EGF 517..564 CDD:395007 19/46 (41%)
EGF_Lam 572..>602 CDD:238012 15/30 (50%)
SMC_prok_B <615..1191 CDD:274008 220/672 (33%)
Blue background indicates that the domain is not in the aligned region.

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