DRSC/TRiP Functional Genomics Resources

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Protein Alignment wb and Lamc2

DIOPT Version :10

Sequence 1:NP_723870.1 Gene:wb / 43946 FlyBaseID:FBgn0261563 Length:3375 Species:Drosophila melanogaster
Sequence 2:NP_032511.3 Gene:Lamc2 / 16782 MGIID:99913 Length:1193 Species:Mus musculus


Alignment Length:694 Identity:223/694 - (32%)
Similarity:322/694 - (46%) Gaps:135/694 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly   450 EICQCYGHAESCTYDPFLDKGI-----CQSCSNNTAGIECEFCEMGFYRELDAPLTDPCLPCSCN 509
            |:|.|.|.:..|.:|..|.:..     |.:|::||||:.||.|..||||..|   .|.||||:|:
Mouse    26 EVCDCNGKSRQCVFDQELHRQTGSGFRCLNCNDNTAGVHCERCREGFYRHRD---RDRCLPCNCH 87

  Fly   510 PARS-TGGCQSDGGSCNCLEGFQGKNCEECAPGYY-----------GDDCKRCECDERGSLGSTG 562
            ...| :.|| .:.|.|.|..|..|:.|:.|.||::           |....:|:||   ..|.:|
Mouse    88 SKGSLSAGC-DNSGQCRCKPGVTGQRCDRCQPGFHMLTDAGCTRDQGQLDSKCDCD---PAGISG 148

  Fly   563 SC-SGVCQCKLNVEGSTCSECAPGYFDLSAENAEGCTSCWCSGVSQTCHSA------KLQTLAFE 620
            .| ||.|.||..|.|..|..|.|||:.|...|.||||.|:|.|.|.:||::      |:.:...:
Mouse   149 PCDSGRCVCKPAVTGERCDRCRPGYYHLDRANPEGCTQCFCYGHSASCHASADFSVHKITSTFSQ 213

  Fly   621 TLNDWKITDIQRVKPISIPVD---AETNRLIFANELDEVEAIYWQASLGYLGNRLTSYGSRLQLV 682
            .::.||.  :||   ...|..   ::.:|.:|:: ....:.:|:.|...:|||:..|||..    
Mouse   214 DVDGWKA--VQR---NGAPAKLHWSQRHRDVFSS-ARRSDPVYFVAPAKFLGNQQVSYGQS---- 268

  Fly   683 LSWDVIRGDRSGKPTTGPNVILVGKNGLKIAFGDESLDGLGINLNVTLTEVGWYHVPPTVVDIKT 747
            ||:| .|.||.|:..:..:||               |:|.|:.:...|...|  ...|..:....
Mouse   269 LSFD-YRVDRGGRQPSAYDVI---------------LEGAGLQIRAPLMAPG--KTLPCGITKTY 315

  Fly   748 RLRRTEGGDYH-GESVTRSQFLSVLVSLDAVLIRAAFHTDQGETS---LERAVIYSGGVELGGKS 808
            ..|..|....| ...::..::..:|.:|.|:||||.:    ||.|   ::...:.|.. .:.|..
Mouse   316 TFRLNEHPSSHWSPQLSYFEYRRLLRNLTALLIRATY----GEYSTGYIDNVTLVSAR-PVSGAP 375

  Fly   809 SSQVEQCLCPAGYTGLSCEGCAFGFKRIYENTSDHQILSKCIPCPCNGHSNSCDLQSGNCGDCMH 873
            :..||:|:|||||.|..|:.||.|:||   :::.......|:||.|.| ..:||..:|:|..   
Mouse   376 APWVERCVCPAGYKGQFCQECASGYKR---DSARLGPFGACVPCNCQG-GGACDPDTGDCYS--- 433

  Fly   874 NTFGD-----RCERCQLGYYGNPLQGTPNDCKRCACPLSEDSNNFSPSCQLKSYNYMDLNPQFEL 933
               ||     .|..|.:|:|.:|  ..|..||.|.|     .|.||.|          :.|:.| 
Mouse   434 ---GDENPDIECADCPIGFYNDP--HDPRSCKPCPC-----HNGFSCS----------VMPETE- 477

  Fly   934 IEHAEYICTQCPEGYTGDHCQVCDDGYFGNP---RQPGSSCQRCDC-------AGGPCNVTTGEC 988
                |.:|..||.|.||..|::|.||:||:|   |.|...||||.|       |.|.|:..||.|
Mouse   478 ----EVVCNNCPPGVTGARCELCADGFFGDPFGERGPVRPCQRCQCNNNVDPNASGNCDQLTGRC 538

  Fly   989 ITCRGNTEGWHCERCKLGYWGD-----PAVGCDPCHCHTEGSESGLCDSTDGQCLCKPRYAGQKC 1048
            :.|..||.|.:|::||.||:||     ||..|..|:|...|||.|.|.. ||.|:|||.:.|..|
Mouse   539 LKCIYNTAGVYCDQCKAGYFGDPLAPNPADKCRACNCSPMGSEPGECRG-DGSCVCKPGFGGLNC 602

  Fly  1049 DECDVGYANVELRCPSCNCDPLGSLVQDRCDPHTGQCHCKEGVM 1092
            |...:      ..||:|.     :.|:.:.|..|.|....|.::
Mouse   603 DHAAL------TSCPACY-----NQVKIQMDQFTQQLQSLEALV 635

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
wbNP_723870.1 Laminin_N 153..398 CDD:459653
EGF_Lam 401..450 CDD:238012 223/694 (32%)
EGF_Lam 505..552 CDD:238012 17/58 (29%)
Laminin_EGF 550..597 CDD:395007 21/47 (45%)
Laminin_B 660..813 CDD:459652 38/156 (24%)
EGF_Lam 851..900 CDD:238012 16/53 (30%)
Laminin_EGF <943..971 CDD:395007 14/30 (47%)
Laminin_EGF 974..1018 CDD:395007 22/55 (40%)
EGF_Lam 1017..1065 CDD:238012 18/47 (38%)
Laminin_EGF 1065..>1105 CDD:395007 6/28 (21%)
EGF_Lam 1150..1197 CDD:238012
Laminin_EGF 1199..1247 CDD:395007
EGF_Lam 1247..1292 CDD:238012
Laminin_EGF 1294..1342 CDD:395007
Laminin_EGF 1340..1392 CDD:395007
Laminin_B 1486..1626 CDD:459652
EGF_Lam 1669..1716 CDD:238012
Laminin_EGF 1718..1767 CDD:395007
EGF_Lam 1772..1819 CDD:238012
YhaN <1907..2141 CDD:443752
SMC_prok_B <2123..>2390 CDD:274008
Laminin_II 2279..2400 CDD:368703
LamG 2399..>2492 CDD:473984
LamG 2586..2753 CDD:238058
Laminin_G_2 2804..2944 CDD:460494
LamG 3018..3167 CDD:238058
LamG 3192..3347 CDD:238058
Lamc2NP_032511.3 Laminin_EGF 28..86 CDD:395007 25/60 (42%)
EGF_Lam 83..127 CDD:238012 15/44 (34%)
Laminin_EGF 139..184 CDD:395007 21/47 (45%)
Laminin_B 250..380 CDD:459652 38/156 (24%)
EGF_Lam 461..509 CDD:238012 22/67 (33%)
Laminin_EGF 517..564 CDD:395007 19/46 (41%)
EGF_Lam 572..>604 CDD:238012 15/32 (47%)
Cell attachment site. /evidence=ECO:0000255 586..588 0/2 (0%)
SMC_prok_B <614..1181 CDD:274008 5/27 (19%)
Blue background indicates that the domain is not in the aligned region.

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