DRSC/TRiP Functional Genomics Resources

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Protein Alignment wb and Lamc2

DIOPT Version :9

Sequence 1:NP_723870.1 Gene:wb / 43946 FlyBaseID:FBgn0261563 Length:3375 Species:Drosophila melanogaster
Sequence 2:NP_032511.3 Gene:Lamc2 / 16782 MGIID:99913 Length:1193 Species:Mus musculus


Alignment Length:694 Identity:223/694 - (32%)
Similarity:322/694 - (46%) Gaps:135/694 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly   450 EICQCYGHAESCTYDPFLDKGI-----CQSCSNNTAGIECEFCEMGFYRELDAPLTDPCLPCSCN 509
            |:|.|.|.:..|.:|..|.:..     |.:|::||||:.||.|..||||..|   .|.||||:|:
Mouse    26 EVCDCNGKSRQCVFDQELHRQTGSGFRCLNCNDNTAGVHCERCREGFYRHRD---RDRCLPCNCH 87

  Fly   510 PARS-TGGCQSDGGSCNCLEGFQGKNCEECAPGYY-----------GDDCKRCECDERGSLGSTG 562
            ...| :.|| .:.|.|.|..|..|:.|:.|.||::           |....:|:||   ..|.:|
Mouse    88 SKGSLSAGC-DNSGQCRCKPGVTGQRCDRCQPGFHMLTDAGCTRDQGQLDSKCDCD---PAGISG 148

  Fly   563 SC-SGVCQCKLNVEGSTCSECAPGYFDLSAENAEGCTSCWCSGVSQTCHSA------KLQTLAFE 620
            .| ||.|.||..|.|..|..|.|||:.|...|.||||.|:|.|.|.:||::      |:.:...:
Mouse   149 PCDSGRCVCKPAVTGERCDRCRPGYYHLDRANPEGCTQCFCYGHSASCHASADFSVHKITSTFSQ 213

  Fly   621 TLNDWKITDIQRVKPISIPVD---AETNRLIFANELDEVEAIYWQASLGYLGNRLTSYGSRLQLV 682
            .::.||.  :||   ...|..   ::.:|.:|:: ....:.:|:.|...:|||:..|||..    
Mouse   214 DVDGWKA--VQR---NGAPAKLHWSQRHRDVFSS-ARRSDPVYFVAPAKFLGNQQVSYGQS---- 268

  Fly   683 LSWDVIRGDRSGKPTTGPNVILVGKNGLKIAFGDESLDGLGINLNVTLTEVGWYHVPPTVVDIKT 747
            ||:| .|.||.|:..:..:||               |:|.|:.:...|...|  ...|..:....
Mouse   269 LSFD-YRVDRGGRQPSAYDVI---------------LEGAGLQIRAPLMAPG--KTLPCGITKTY 315

  Fly   748 RLRRTEGGDYH-GESVTRSQFLSVLVSLDAVLIRAAFHTDQGETS---LERAVIYSGGVELGGKS 808
            ..|..|....| ...::..::..:|.:|.|:||||.:    ||.|   ::...:.|.. .:.|..
Mouse   316 TFRLNEHPSSHWSPQLSYFEYRRLLRNLTALLIRATY----GEYSTGYIDNVTLVSAR-PVSGAP 375

  Fly   809 SSQVEQCLCPAGYTGLSCEGCAFGFKRIYENTSDHQILSKCIPCPCNGHSNSCDLQSGNCGDCMH 873
            :..||:|:|||||.|..|:.||.|:||   :::.......|:||.|.| ..:||..:|:|..   
Mouse   376 APWVERCVCPAGYKGQFCQECASGYKR---DSARLGPFGACVPCNCQG-GGACDPDTGDCYS--- 433

  Fly   874 NTFGD-----RCERCQLGYYGNPLQGTPNDCKRCACPLSEDSNNFSPSCQLKSYNYMDLNPQFEL 933
               ||     .|..|.:|:|.:|  ..|..||.|.|     .|.||.|          :.|:.| 
Mouse   434 ---GDENPDIECADCPIGFYNDP--HDPRSCKPCPC-----HNGFSCS----------VMPETE- 477

  Fly   934 IEHAEYICTQCPEGYTGDHCQVCDDGYFGNP---RQPGSSCQRCDC-------AGGPCNVTTGEC 988
                |.:|..||.|.||..|::|.||:||:|   |.|...||||.|       |.|.|:..||.|
Mouse   478 ----EVVCNNCPPGVTGARCELCADGFFGDPFGERGPVRPCQRCQCNNNVDPNASGNCDQLTGRC 538

  Fly   989 ITCRGNTEGWHCERCKLGYWGD-----PAVGCDPCHCHTEGSESGLCDSTDGQCLCKPRYAGQKC 1048
            :.|..||.|.:|::||.||:||     ||..|..|:|...|||.|.|.. ||.|:|||.:.|..|
Mouse   539 LKCIYNTAGVYCDQCKAGYFGDPLAPNPADKCRACNCSPMGSEPGECRG-DGSCVCKPGFGGLNC 602

  Fly  1049 DECDVGYANVELRCPSCNCDPLGSLVQDRCDPHTGQCHCKEGVM 1092
            |...:      ..||:|.     :.|:.:.|..|.|....|.::
Mouse   603 DHAAL------TSCPACY-----NQVKIQMDQFTQQLQSLEALV 635

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
wbNP_723870.1 Laminin_N 164..396 CDD:278484
EGF_Lam 401..450 CDD:238012 223/694 (32%)
TNFRSF <407..507 CDD:304602 25/61 (41%)
EGF_Lam 505..552 CDD:238012 17/58 (29%)
Laminin_EGF 550..597 CDD:278482 21/47 (45%)
Laminin_B 660..798 CDD:278481 36/141 (26%)
EGF_Lam 851..900 CDD:238012 16/53 (30%)
Laminin_EGF <943..971 CDD:278482 14/30 (47%)
VSP 953..1414 CDD:146106 58/155 (37%)
Laminin_EGF 974..1018 CDD:278482 22/55 (40%)
EGF_Lam 1017..1065 CDD:238012 18/47 (38%)
Laminin_EGF 1065..>1105 CDD:278482 6/28 (21%)
EGF_Lam 1150..1197 CDD:238012
Laminin_EGF 1199..1247 CDD:278482
EGF_Lam 1247..1292 CDD:238012
Laminin_EGF 1294..1342 CDD:278482
Laminin_EGF 1340..1392 CDD:278482
Laminin_B 1486..1611 CDD:278481
EGF_Lam 1669..1716 CDD:238012
Laminin_EGF 1718..1767 CDD:278482
EGF_Lam 1772..1819 CDD:238012
CrfC <1933..2267 CDD:223771
Laminin_II 2277..2400 CDD:283628
LamG 2399..>2492 CDD:304605
Laminin_G_2 2616..2755 CDD:280389
Laminin_G_2 2804..2944 CDD:280389
Laminin_G_2 3038..3169 CDD:280389
LamG 3192..3347 CDD:238058
Lamc2NP_032511.3 Laminin_EGF 28..86 CDD:365839 25/60 (42%)
EGF_Lam 83..127 CDD:238012 15/44 (34%)
Laminin_EGF 139..184 CDD:365839 21/47 (45%)
Laminin_B 245..370 CDD:383018 37/151 (25%)
EGF_Lam 461..509 CDD:238012 22/67 (33%)
Laminin_EGF 517..564 CDD:365839 19/46 (41%)
EGF_Lam 572..>604 CDD:238012 15/32 (47%)
Cell attachment site. /evidence=ECO:0000255 586..588 0/2 (0%)
SMC_prok_B <614..1192 CDD:274008 5/27 (19%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1836
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
32.810

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