DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment wb and Hspg2

DIOPT Version :9

Sequence 1:NP_723870.1 Gene:wb / 43946 FlyBaseID:FBgn0261563 Length:3375 Species:Drosophila melanogaster
Sequence 2:XP_030109089.1 Gene:Hspg2 / 15530 MGIID:96257 Length:4398 Species:Mus musculus


Alignment Length: Identity:/ - (0%)
Similarity:/ - (0%) Gaps:/ - (0%)


- Green bases have known domain annotations that are detailed below.


Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
wbNP_723870.1 Laminin_N 164..396 CDD:278484
EGF_Lam 401..450 CDD:238012
TNFRSF <407..507 CDD:304602
EGF_Lam 505..552 CDD:238012
Laminin_EGF 550..597 CDD:278482
Laminin_B 660..798 CDD:278481
EGF_Lam 851..900 CDD:238012
Laminin_EGF <943..971 CDD:278482
VSP 953..1414 CDD:146106
Laminin_EGF 974..1018 CDD:278482
EGF_Lam 1017..1065 CDD:238012
Laminin_EGF 1065..>1105 CDD:278482
EGF_Lam 1150..1197 CDD:238012
Laminin_EGF 1199..1247 CDD:278482
EGF_Lam 1247..1292 CDD:238012
Laminin_EGF 1294..1342 CDD:278482
Laminin_EGF 1340..1392 CDD:278482
Laminin_B 1486..1611 CDD:278481
EGF_Lam 1669..1716 CDD:238012
Laminin_EGF 1718..1767 CDD:278482
EGF_Lam 1772..1819 CDD:238012
CrfC <1933..2267 CDD:223771
Laminin_II 2277..2400 CDD:283628
LamG 2399..>2492 CDD:304605
Laminin_G_2 2616..2755 CDD:280389
Laminin_G_2 2804..2944 CDD:280389
Laminin_G_2 3038..3169 CDD:280389
LamG 3192..3347 CDD:238058
Hspg2XP_030109089.1 EGF_CA 4153..4184 CDD:238011
LamG 4211..4369 CDD:238058
SEA 80..194 CDD:382994
LDLa 216..251 CDD:238060
Ldl_recept_a 300..336 CDD:365841
LDLa 342..376 CDD:238060
LDLa 385..420 CDD:238060
Ig_Perlecan_like 438..515 CDD:143220
LamB 607..733 CDD:214597
EGF_Lam 781..823 CDD:238012
EGF_Lam 830..887 CDD:238012
Laminin_EGF 896..938 CDD:365839
Laminin_B 1007..1141 CDD:365838
EGF_Lam 1175..1224 CDD:238012
EGF_Lam 1225..1281 CDD:238012
Laminin_EGF 1292..1339 CDD:365839
Laminin_B 1413..1545 CDD:365838
EGF_Lam 1580..1628 CDD:238012
EGF_Lam 1629..1686 CDD:238012
IG_like 1699..1779 CDD:214653
Ig_Perlecan_like 1787..1872 CDD:143231
IG_like 1888..1966 CDD:214653
I-set 1972..2058 CDD:369462
IG_like 2073..2150 CDD:214653
IG 2174..2249 CDD:214652
IG 2269..2342 CDD:214652
IG 2364..2441 CDD:214652
Ig 2450..2535 CDD:386229
IG 2563..2632 CDD:214652
IGc2 2658..2717 CDD:197706
IG_like 2748..2825 CDD:214653
IG 2846..2922 CDD:214652
IG_like 2943..3021 CDD:214653
Ig 3034..3120 CDD:386229
IG_like 3132..3213 CDD:214653
IG 3230..3306 CDD:214652
Ig 3327..3390 CDD:319273
Ig 3428..3494 CDD:386229
Ig 3518..3583 CDD:386229
I-set 3587..3669 CDD:369462
LamG 3676..3833 CDD:238058
EGF_CA 3856..3889 CDD:238011
EGF_CA <3901..3930 CDD:238011
LamG 3942..4091 CDD:238058
EGF 4116..4146 CDD:333761
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 62 1.000 Domainoid score I10359
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.910

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