DRSC/TRiP Functional Genomics Resources

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Protein Alignment wb and lama3

DIOPT Version :9

Sequence 1:NP_723870.1 Gene:wb / 43946 FlyBaseID:FBgn0261563 Length:3375 Species:Drosophila melanogaster
Sequence 2:XP_031759700.1 Gene:lama3 / 100496680 XenbaseID:XB-GENE-984634 Length:3454 Species:Xenopus tropicalis


Alignment Length: Identity:/ - (0%)
Similarity:/ - (0%) Gaps:/ - (0%)


- Green bases have known domain annotations that are detailed below.


Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
wbNP_723870.1 Laminin_N 164..396 CDD:278484
EGF_Lam 401..450 CDD:238012
TNFRSF <407..507 CDD:304602
EGF_Lam 505..552 CDD:238012
Laminin_EGF 550..597 CDD:278482
Laminin_B 660..798 CDD:278481
EGF_Lam 851..900 CDD:238012
Laminin_EGF <943..971 CDD:278482
VSP 953..1414 CDD:146106
Laminin_EGF 974..1018 CDD:278482
EGF_Lam 1017..1065 CDD:238012
Laminin_EGF 1065..>1105 CDD:278482
EGF_Lam 1150..1197 CDD:238012
Laminin_EGF 1199..1247 CDD:278482
EGF_Lam 1247..1292 CDD:238012
Laminin_EGF 1294..1342 CDD:278482
Laminin_EGF 1340..1392 CDD:278482
Laminin_B 1486..1611 CDD:278481
EGF_Lam 1669..1716 CDD:238012
Laminin_EGF 1718..1767 CDD:278482
EGF_Lam 1772..1819 CDD:238012
CrfC <1933..2267 CDD:223771
Laminin_II 2277..2400 CDD:283628
LamG 2399..>2492 CDD:304605
Laminin_G_2 2616..2755 CDD:280389
Laminin_G_2 2804..2944 CDD:280389
Laminin_G_2 3038..3169 CDD:280389
LamG 3192..3347 CDD:238058
lama3XP_031759700.1 Laminin_N 54..309 CDD:395009
EGF_Lam 310..358 CDD:238012
EGF_Lam 369..438 CDD:238012
EGF_Lam 439..479 CDD:238012
Laminin_EGF 506..554 CDD:395007
Laminin_EGF 552..599 CDD:395007
Laminin_EGF 597..644 CDD:395007
EGF_Lam 641..683 CDD:238012
EGF_Lam 737..788 CDD:238012
EGF_Lam 790..832 CDD:238012
EGF_Lam 1382..1424 CDD:238012
Laminin_EGF 1473..1524 CDD:395007
Laminin_EGF 1522..1570 CDD:395007
Laminin_B 1634..1770 CDD:395006
EGF_Lam 1804..1850 CDD:238012
Laminin_EGF 1852..1905 CDD:395007
Laminin_I 1968..2222 CDD:310534
SMC_prok_B 2091..>2419 CDD:274008
Laminin_II 2400..2532 CDD:368703
LamG 2506..2687 CDD:238058
LamG 2721..2865 CDD:238058
LamG 2892..3023 CDD:238058
LamG 3106..3256 CDD:238058
LamG 3303..3432 CDD:214598
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR10574
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.100

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