DRSC/TRiP Functional Genomics Resources

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Protein Alignment wb and agrn

DIOPT Version :10

Sequence 1:NP_723870.1 Gene:wb / 43946 FlyBaseID:FBgn0261563 Length:3375 Species:Drosophila melanogaster
Sequence 2:XP_017951501.1 Gene:agrn / 100492176 XenbaseID:XB-GENE-953967 Length:2109 Species:Xenopus tropicalis


Alignment Length:133 Identity:34/133 - (25%)
Similarity:49/133 - (36%) Gaps:45/133 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly    20 LIAC-MTLF--GAIVLPKWLIGPE----VIQ---IRNEEGNFTVL----RHPSVGIYNRCKRMGR 70
            |:.| :|.|  |:|.:..:|.|.|    |:.   |||.:..|.:|    ..|..|....|    :
 Frog   141 LLVCHVTDFYPGSIQVRWFLNGQEETAGVVSTNLIRNGDWTFQILVMLEMTPQQGDVYTC----Q 201

  Fly    71 IEYNCGNFDLNGLLTDSTVFPVPWKF------TMTLMCVGTMLLGLTLVSTLVTCCRLHSVYGFS 129
            :|:..         .||.| .|.||.      :.||...|..:|||.:...           |..
 Frog   202 VEHTS---------LDSPV-TVEWKAQSDSARSKTLTGAGGFVLGLIICGV-----------GIF 245

  Fly   130 MHK 132
            ||:
 Frog   246 MHR 248

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
wbNP_723870.1 Laminin_N 153..398 CDD:459653
EGF_Lam 401..450 CDD:238012
EGF_Lam 505..552 CDD:238012
Laminin_EGF 550..597 CDD:395007
Laminin_B 660..813 CDD:459652
EGF_Lam 851..900 CDD:238012
Laminin_EGF <943..971 CDD:395007
Laminin_EGF 974..1018 CDD:395007
EGF_Lam 1017..1065 CDD:238012
Laminin_EGF 1065..>1105 CDD:395007
EGF_Lam 1150..1197 CDD:238012
Laminin_EGF 1199..1247 CDD:395007
EGF_Lam 1247..1292 CDD:238012
Laminin_EGF 1294..1342 CDD:395007
Laminin_EGF 1340..1392 CDD:395007
Laminin_B 1486..1626 CDD:459652
EGF_Lam 1669..1716 CDD:238012
Laminin_EGF 1718..1767 CDD:395007
EGF_Lam 1772..1819 CDD:238012
YhaN <1907..2141 CDD:443752
SMC_prok_B <2123..>2390 CDD:274008
Laminin_II 2279..2400 CDD:368703
LamG 2399..>2492 CDD:473984
LamG 2586..2753 CDD:238058
Laminin_G_2 2804..2944 CDD:460494
LamG 3018..3167 CDD:238058
LamG 3192..3347 CDD:238058
agrnXP_017951501.1 NtA 30..145 CDD:460825 1/3 (33%)
KAZAL 204..247 CDD:197624 13/63 (21%)
KAZAL 276..322 CDD:197624
KAZAL 351..394 CDD:197624
KAZAL 421..466 CDD:197624
KAZAL 495..540 CDD:197624
KAZAL 560..605 CDD:197624
KAZAL 634..670 CDD:197624
KAZAL 711..757 CDD:197624
Laminin_EGF 798..840 CDD:395007
Laminin_EGF 852..>888 CDD:395007
KAZAL <941..974 CDD:197624
SEA 1147..1268 CDD:214554
EGF 1377..1405 CDD:394967
LamG 1419..1568 CDD:238058
EGF 1595..1626 CDD:394967
Laminin_G_1 1710..1845 CDD:395008
EGF_CA <1870..1898 CDD:238011
Laminin_G_1 1961..2092 CDD:395008
Blue background indicates that the domain is not in the aligned region.

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