DRSC/TRiP Functional Genomics Resources

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Protein Alignment wb and ntn4

DIOPT Version :9

Sequence 1:NP_723870.1 Gene:wb / 43946 FlyBaseID:FBgn0261563 Length:3375 Species:Drosophila melanogaster
Sequence 2:XP_031754773.1 Gene:ntn4 / 100379839 XenbaseID:XB-GENE-5823493 Length:636 Species:Xenopus tropicalis


Alignment Length:525 Identity:144/525 - (27%)
Similarity:222/525 - (42%) Gaps:118/525 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly   155 PPLFNVVPRAQISVNATCGQNGAE------EYCKQVGAKP-CGICNAHSSDRAKQRSIQSLISSG 212
            |.:.|:.....:....|||.|..|      .|.:|...:| |..|||     |..|     :|..
 Frog    45 PRMGNLAIGRSLWTETTCGHNNTELSCTYQGYIEQTCTEPKCDKCNA-----ALPR-----LSHP 99

  Fly   213 SGSGSGSGFE--EGWWQSPTLQGGRQFEYVTILLDLKQTFQIFSVWLKSANSPRPASWILEKSLD 275
            ..:.:.|.|:  ..||||     .:......|.|||:..| .|:..:....|||||:.|||:|.|
 Frog   100 PSAMADSSFKIPRTWWQS-----AKDIHREVIRLDLETEF-YFTHLIMVFKSPRPAAMILERSQD 158

  Fly   276 -GINFEPWQYFGLSDADCQRRWNLSGQNGKYVFQNDTE---IICSTQFSKPGPLENG-VLHASLL 335
             |:.:.|::||.:   :|         :..:..::|.:   .:|::::|...|...| |::.::.
 Frog   159 FGVTWMPYKYFSI---NC---------SATFAMEDDIQEKGALCTSRYSHAFPCTGGEVIYRTMS 211

  Fly   336 KNRPGATDQSPELMKFITTRYIRIRLQGMHSTANQDNSLDWLLDSPSLEKHSFYSLSQLKVSARL 400
            .........|.|....:....:|::|....:...|:.:.|   ..|....|  |::....|....
 Frog   212 PPYSAQDPYSKEAQDQLKITNLRVQLLKQQACPCQEKNSD---IKPQYFTH--YAVYDFIVKGSC 271

  Fly   401 DCNGHANRSHESPDDPLMQ-------------CICQHNTCGAQCEQCCPLFQDRPYQMG----GE 448
            .|||||:  |....|...|             |||:|||.|..||.|.||:.|:.::..    ||
 Frog   272 FCNGHAD--HCVAADGFRQVRTTSKIQVVHGRCICKHNTAGPHCEHCAPLYNDQLWEAANGKTGE 334

  Fly   449 ---CEICQCYGHAESCTYDPFLD---------KGICQSCSNNTAGIECEFCEMGFYRELDAPLT- 500
               |:.|:|.|||:||.:|  :|         .|:|.:|.:||.|.:|:.|:.||:|:|..|.: 
 Frog   335 ANTCKKCKCNGHADSCHFD--MDVWLGSGNRTGGVCDNCQHNTEGSQCQRCKPGFFRDLKMPFSA 397

  Fly   501 -DPCLPCSCNPARST----GG---CQSDGGSCNCLEGFQGKNCEECAPGYYG---DDCKRCECDE 554
             |.|..|||:|..|.    |.   |....|.|.|..|..|.:|::|..||:|   ..|:.|:|  
 Frog   398 PDACKACSCHPIGSAVLPFGNITLCDPTNGDCPCKPGVAGPHCDQCMVGYWGFGEYGCRPCDC-- 460

  Fly   555 RGSLGSTGSC---SGVCQCKLNVEGSTCSECAPGYFD----LSAENAEGCTSCW--CSGVSQTCH 610
                  .|||   :|.|...|:::         .|.:    ||..|....:..|  ..|.|...|
 Frog   461 ------AGSCDPFTGDCITNLDID---------WYREFPELLSVYNESQLSRTWEDEQGFSALRH 510

  Fly   611 SAKLQ 615
            |.|.:
 Frog   511 SGKCE 515

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
wbNP_723870.1 Laminin_N 164..396 CDD:278484 57/245 (23%)
EGF_Lam 401..450 CDD:238012 23/68 (34%)
TNFRSF <407..507 CDD:304602 43/130 (33%)
EGF_Lam 505..552 CDD:238012 19/56 (34%)
Laminin_EGF 550..597 CDD:278482 12/53 (23%)
Laminin_B 660..798 CDD:278481
EGF_Lam 851..900 CDD:238012
Laminin_EGF <943..971 CDD:278482
VSP 953..1414 CDD:146106
Laminin_EGF 974..1018 CDD:278482
EGF_Lam 1017..1065 CDD:238012
Laminin_EGF 1065..>1105 CDD:278482
EGF_Lam 1150..1197 CDD:238012
Laminin_EGF 1199..1247 CDD:278482
EGF_Lam 1247..1292 CDD:238012
Laminin_EGF 1294..1342 CDD:278482
Laminin_EGF 1340..1392 CDD:278482
Laminin_B 1486..1611 CDD:278481
EGF_Lam 1669..1716 CDD:238012
Laminin_EGF 1718..1767 CDD:278482
EGF_Lam 1772..1819 CDD:238012
CrfC <1933..2267 CDD:223771
Laminin_II 2277..2400 CDD:283628
LamG 2399..>2492 CDD:304605
Laminin_G_2 2616..2755 CDD:280389
Laminin_G_2 2804..2944 CDD:280389
Laminin_G_2 3038..3169 CDD:280389
LamG 3192..3347 CDD:238058
ntn4XP_031754773.1 Laminin_N 44..269 CDD:395009 60/256 (23%)
EGF_Lam 270..322 CDD:238012 20/53 (38%)
Laminin_EGF 341..394 CDD:395007 21/54 (39%)
EGF_Lam 404..455 CDD:214543 17/50 (34%)
NTR_netrin-4_like 526..634 CDD:239633
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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