DRSC/TRiP Functional Genomics Resources

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Protein Alignment wb and ntn4

DIOPT Version :10

Sequence 1:NP_723870.1 Gene:wb / 43946 FlyBaseID:FBgn0261563 Length:3375 Species:Drosophila melanogaster
Sequence 2:XP_031754773.1 Gene:ntn4 / 100379839 XenbaseID:XB-GENE-5823493 Length:636 Species:Xenopus tropicalis


Alignment Length:525 Identity:144/525 - (27%)
Similarity:222/525 - (42%) Gaps:118/525 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly   155 PPLFNVVPRAQISVNATCGQNGAE------EYCKQVGAKP-CGICNAHSSDRAKQRSIQSLISSG 212
            |.:.|:.....:....|||.|..|      .|.:|...:| |..|||     |..|     :|..
 Frog    45 PRMGNLAIGRSLWTETTCGHNNTELSCTYQGYIEQTCTEPKCDKCNA-----ALPR-----LSHP 99

  Fly   213 SGSGSGSGFE--EGWWQSPTLQGGRQFEYVTILLDLKQTFQIFSVWLKSANSPRPASWILEKSLD 275
            ..:.:.|.|:  ..||||     .:......|.|||:..| .|:..:....|||||:.|||:|.|
 Frog   100 PSAMADSSFKIPRTWWQS-----AKDIHREVIRLDLETEF-YFTHLIMVFKSPRPAAMILERSQD 158

  Fly   276 -GINFEPWQYFGLSDADCQRRWNLSGQNGKYVFQNDTE---IICSTQFSKPGPLENG-VLHASLL 335
             |:.:.|::||.:   :|         :..:..::|.:   .:|::::|...|...| |::.::.
 Frog   159 FGVTWMPYKYFSI---NC---------SATFAMEDDIQEKGALCTSRYSHAFPCTGGEVIYRTMS 211

  Fly   336 KNRPGATDQSPELMKFITTRYIRIRLQGMHSTANQDNSLDWLLDSPSLEKHSFYSLSQLKVSARL 400
            .........|.|....:....:|::|....:...|:.:.|   ..|....|  |::....|....
 Frog   212 PPYSAQDPYSKEAQDQLKITNLRVQLLKQQACPCQEKNSD---IKPQYFTH--YAVYDFIVKGSC 271

  Fly   401 DCNGHANRSHESPDDPLMQ-------------CICQHNTCGAQCEQCCPLFQDRPYQMG----GE 448
            .|||||:  |....|...|             |||:|||.|..||.|.||:.|:.::..    ||
 Frog   272 FCNGHAD--HCVAADGFRQVRTTSKIQVVHGRCICKHNTAGPHCEHCAPLYNDQLWEAANGKTGE 334

  Fly   449 ---CEICQCYGHAESCTYDPFLD---------KGICQSCSNNTAGIECEFCEMGFYRELDAPLT- 500
               |:.|:|.|||:||.:|  :|         .|:|.:|.:||.|.:|:.|:.||:|:|..|.: 
 Frog   335 ANTCKKCKCNGHADSCHFD--MDVWLGSGNRTGGVCDNCQHNTEGSQCQRCKPGFFRDLKMPFSA 397

  Fly   501 -DPCLPCSCNPARST----GG---CQSDGGSCNCLEGFQGKNCEECAPGYYG---DDCKRCECDE 554
             |.|..|||:|..|.    |.   |....|.|.|..|..|.:|::|..||:|   ..|:.|:|  
 Frog   398 PDACKACSCHPIGSAVLPFGNITLCDPTNGDCPCKPGVAGPHCDQCMVGYWGFGEYGCRPCDC-- 460

  Fly   555 RGSLGSTGSC---SGVCQCKLNVEGSTCSECAPGYFD----LSAENAEGCTSCW--CSGVSQTCH 610
                  .|||   :|.|...|:::         .|.:    ||..|....:..|  ..|.|...|
 Frog   461 ------AGSCDPFTGDCITNLDID---------WYREFPELLSVYNESQLSRTWEDEQGFSALRH 510

  Fly   611 SAKLQ 615
            |.|.:
 Frog   511 SGKCE 515

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
wbNP_723870.1 Laminin_N 153..398 CDD:459653 60/256 (23%)
EGF_Lam 401..450 CDD:238012 23/68 (34%)
EGF_Lam 505..552 CDD:238012 19/56 (34%)
Laminin_EGF 550..597 CDD:395007 12/53 (23%)
Laminin_B 660..813 CDD:459652
EGF_Lam 851..900 CDD:238012
Laminin_EGF <943..971 CDD:395007
Laminin_EGF 974..1018 CDD:395007
EGF_Lam 1017..1065 CDD:238012
Laminin_EGF 1065..>1105 CDD:395007
EGF_Lam 1150..1197 CDD:238012
Laminin_EGF 1199..1247 CDD:395007
EGF_Lam 1247..1292 CDD:238012
Laminin_EGF 1294..1342 CDD:395007
Laminin_EGF 1340..1392 CDD:395007
Laminin_B 1486..1626 CDD:459652
EGF_Lam 1669..1716 CDD:238012
Laminin_EGF 1718..1767 CDD:395007
EGF_Lam 1772..1819 CDD:238012
YhaN <1907..2141 CDD:443752
SMC_prok_B <2123..>2390 CDD:274008
Laminin_II 2279..2400 CDD:368703
LamG 2399..>2492 CDD:473984
LamG 2586..2753 CDD:238058
Laminin_G_2 2804..2944 CDD:460494
LamG 3018..3167 CDD:238058
LamG 3192..3347 CDD:238058
ntn4XP_031754773.1 Laminin_N 43..269 CDD:459653 60/256 (23%)
EGF_Lam 270..322 CDD:238012 20/53 (38%)
Laminin_EGF 341..394 CDD:395007 21/54 (39%)
EGF_Lam 404..455 CDD:214543 17/50 (34%)
NTR_netrin-4_like 526..634 CDD:239633
Blue background indicates that the domain is not in the aligned region.

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