DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment sbr and nxf1

DIOPT Version :9

Sequence 1:NP_524660.1 Gene:sbr / 43944 FlyBaseID:FBgn0003321 Length:672 Species:Drosophila melanogaster
Sequence 2:XP_031756030.1 Gene:nxf1 / 734058 XenbaseID:XB-GENE-489552 Length:627 Species:Xenopus tropicalis


Alignment Length:708 Identity:223/708 - (31%)
Similarity:332/708 - (46%) Gaps:132/708 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly    16 VGNGGGRYNAPEDF-------DD-----FDVEDRQRRKDRNKRRVSFKPSQCLHNKKDIKLRPED 68
            :|.|..|   ||:.       ||     |.::.|:.|.....:..|..|.: ..||......|..
 Frog     1 MGKGLAR---PEEITLTRTEHDDRYGGGFSMKKRKGRGPFMGKMYSEGPHK-YRNKGGYGPNPRS 61

  Fly    69 LRRWDEDDDMSDMTTAVKD-RPTSRRRGSPIPRG------KFGKLMPNSFG-------------- 112
             |..|:|.|:     |:.| ..:||.|..|..||      |.|:...| ||              
 Frog    62 -RLEDDDGDV-----AMGDAHESSRHRFVPYGRGGKRRDEKPGRDKKN-FGGSHREPQQQGRAEY 119

  Fly   113 ------WYQVTLQNAQIYEKETLLSALLAAMS-PHVFIPQYWRVERNCVIFFTDDYEAAERIQHL 170
                  |::||:.:.:.|||..||..|..|.| |  |.|.::..:.|...||.:|..||:.::.|
 Frog   120 SEDRKSWFKVTIPHGKKYEKSWLLGILQGASSVP--FNPVHYHTDHNRAHFFVEDSAAAKALKQL 182

  Fly   171 GKNGHLPDGYRLMPRVRSGIP----LVAIDDAFKEKMKVTMAKRYNIQTKALDLSRFHADPDL-- 229
            .:.....:.:::....|...|    ...|.|...|..|..|.|||:...:|||:....:||||  
 Frog   183 SRTFTDRENFKITILTRPCPPPQNFTKEIKDEELEHFKNCMQKRYDGAHQALDMKAVRSDPDLVA 247

  Fly   230 KQVFCPLFRQNVMGAAIDIMCDNIPDLEALNLNDNSISSMEAFKGVEKRLPNLKILYLGDNKIPS 294
            .:|...|.|:..|...:.|:.||:|:|.:|::::|.:..::..:.:..:.||||||.|..|.:.|
 Frog   248 NKVDLILNRKCYMTTMLQIIEDNVPELLSLDISNNKLYKLDDLEEITLKAPNLKILNLSQNLLKS 312

  Fly   295 LAHLVVLRNLSILELVLKNNPCRSRYKDSQQFISEVRRKFPKLVKLDGETLEPQITFDLSEQGRL 359
            ...|..::.|.:.||.|..||....::|...:||.||.:||||::|||..|.|.||||:.....|
 Frog   313 DRELDKVKGLKLEELWLDGNPLCDTFRDQTNYISAVRERFPKLLRLDGHELPPPITFDVETPTTL 377

  Fly   360 LETKASYLCDVAGAEVVRQFLDQYFRIFDSGNRQALLDAYHEKAMLSISMPS----ASQAGRLNS 420
            ...|.|||.......:|.:||.||:..:||.:||.||:.||::|..|:|:||    ......|..
 Frog   378 PPCKGSYLASDDIKALVLRFLQQYYACYDSEDRQGLLNVYHDEACCSLSIPSNPGQNPSRSSLGE 442

  Fly   421 FWKFNRNLRRLLNGEENRTRNLKYGRLACVSTLDEWPKTQHDRRTFTVDLTIYNTSMMVFTVTGL 485
            ::|.:||:|| |.....|.:.||:.||..|..|:|.|:||||..:|.||:|.::.:::.|.|.|:
 Frog   443 YFKDSRNIRR-LRDPTLRFKLLKHKRLNVVGFLNELPRTQHDLNSFVVDITAHSNTLLCFVVNGI 506

  Fly   486 FKELNDETNNPASMELYDVRHFARTYVVVP-QNNGFCIRNETIFITNATHEQVREFKRSQHQPAP 549
            |||:..:::||       ||.|:|.::.|| .:.|..:.|:..||.|||.|::|   ::...|||
 Frog   507 FKEVEGQSSNP-------VRAFSRVFIAVPGSDGGLLLVNDEQFIRNATTEEIR---KAFATPAP 561

  Fly   550 GAMPSTSSAVTSPQAGAAAGLQGRLNALGVATGPVAILSGDPLAATAPVNSGSAAISTTAVAPGA 614
              .||:|                          ||.:|                       ||..
 Frog   562 --TPSSS--------------------------PVPVL-----------------------APVP 575

  Fly   615 QDESTKMQMIEAMSAQSQMNVIWSRKCLEETNWDFNHAAFVFEKLFKENKIPPEAFMK 672
            .|      |::|....|.||..||:||||:..|||:.|..:|.||..|.|||..||||
 Frog   576 HD------MVQAFIQVSGMNAEWSQKCLEDNGWDFDQAGQIFMKLNAEGKIPDVAFMK 627

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
sbrNP_524660.1 Tap-RNA_bind 112..191 CDD:286271 23/99 (23%)
leucine-rich repeat 215..255 CDD:275382 14/41 (34%)
LRR_RI <223..341 CDD:238064 40/119 (34%)
LRR_8 256..315 CDD:290566 17/58 (29%)
LRR_4 256..298 CDD:289563 12/41 (29%)
leucine-rich repeat 256..281 CDD:275382 3/24 (13%)
leucine-rich repeat 282..305 CDD:275382 8/22 (36%)
leucine-rich repeat 306..336 CDD:275382 11/29 (38%)
NTF2 372..531 CDD:238403 60/163 (37%)
Big_3_5 <578..>614 CDD:293246 5/35 (14%)
TAP_C 609..671 CDD:197882 26/61 (43%)
nxf1XP_031756030.1 Tap-RNA_bind 123..204 CDD:401194 22/82 (27%)
leucine-rich repeat 231..273 CDD:275382 14/41 (34%)
LRR_8 272..334 CDD:404697 19/61 (31%)
leucine-rich repeat 274..299 CDD:275382 3/24 (13%)
leucine-rich repeat 300..323 CDD:275382 8/22 (36%)
leucine-rich repeat 324..354 CDD:275382 11/29 (38%)
NTF2_like 389..540 CDD:415585 57/158 (36%)
TAP_C 564..626 CDD:197882 31/116 (27%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 109 1.000 Domainoid score I6311
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 1 1.000 - - H38176
Inparanoid 1 1.050 260 1.000 Inparanoid score I3032
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1051093at2759
OrthoFinder 1 1.000 - - FOG0000862
OrthoInspector 1 1.000 - - otm48532
Panther 1 1.100 - - LDO PTHR10662
Phylome 00.000 Not matched by this tool.
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R710
SonicParanoid 1 1.000 - - X1267
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
99.190

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