DRSC/TRiP Functional Genomics Resources

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Protein Alignment sbr and Nxf5

DIOPT Version :10

Sequence 1:NP_524660.1 Gene:sbr / 43944 FlyBaseID:FBgn0003321 Length:672 Species:Drosophila melanogaster
Sequence 2:XP_063136630.1 Gene:Nxf5 / 680025 RGDID:1596862 Length:695 Species:Rattus norvegicus


Alignment Length:562 Identity:130/562 - (23%)
Similarity:231/562 - (41%) Gaps:156/562 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly   113 WYQVTLQNAQIYEKETLLSALLAAMSPHVFIPQYWRVERNCVIFFTDDYEAAERIQHLGKNGHLP 177
            |:::|:.|.:.|.|..|:: ||.:.....|.|..::..||.:.||....:.|..:.::       
  Rat    99 WFKITIPNGKKYNKMWLIN-LLQSYCSMGFTPVDFQYIRNGIQFFVQSTKTAVELMNI------- 155

  Fly   178 DGYRLMPRVRSGIPLVA------------IDDAFKEKMKVTMAKRYNIQTKALDLSRFHADPDLK 230
             .|::.......|.:..            :..|....:|::|.|||::..|||.|.:...|.||.
  Rat   156 -NYQISDEENKKISIYVNSSSEPASVHYKLTAAQMHSLKLSMKKRYDVSKKALYLGKLRFDQDLM 219

  Fly   231 QVFCPLF--RQNVMGAAIDIMCDNIPDLEALNLNDNSISSMEAFKGVEKRLPNLKILYLGDNKIP 293
            .....:|  |::.|.||:.|:.:|.|:|.:||:::|.|..::....:.::.|::|.|.|..|.:.
  Rat   220 DHGIDMFLNRRSCMTAALQIIQENFPELLSLNVSNNKIYWLDGLSELIEKAPHVKTLNLSRNLLR 284

  Fly   294 SLAHLVVLRNLSILELVLKNNPCRSRYKDSQQFISEVRRKFPKLVKL------------------ 340
            :...|..:|.|::.:|.|:.||..|.:.|...::|.:...||:|..|                  
  Rat   285 TAWELEKIRGLNLEQLWLEGNPLCSTFPDHSSYVSAILNYFPELSHLVSSRLHHFSSPSNTRPPS 349

  Fly   341 -------------------------------------------DGETLE---------------- 346
                                                       .|:.|:                
  Rat   350 LLPSPVCLARKHVCSRLLSKKNMNIFLREKYPISTERRKEERGKGDILQMSTVISQPTGFPAPFH 414

  Fly   347 ------------------------PQITFDLSEQGRLLET------------KASYLCDVAGAEV 375
                                    |.|::.|.:..:|..|            |.||    .|:|.
  Rat   415 TCLLFLFQSLLYLLGHHMSCPPSVPLISYFLQDGRKLFPTIDINTLEIIKPRKESY----KGSEC 475

  Fly   376 VR----QFLDQYFRIFDSGNRQALLDAYHEKAMLSISMPSASQAGRLNS---FWKFNRNLRRLLN 433
            ::    ||:.||:.|:|.|:|.:||:|||..|..|:::...|....::|   :.|.|||::.|.|
  Rat   476 LKNLLVQFMLQYYLIYDYGDRHSLLNAYHANACFSLAITFNSDKADMSSLEDYLKDNRNMKMLTN 540

  Fly   434 GEENRTRNLKYGRLACVSTLDEWPKTQHDRRTFTVDLTIYNTSMMVFTVTGLFKELNDETNNPAS 498
             ...|.:.||:.:...|:.|.|.||||||..::.||:.:....|:.|:|.|:|||:..::..   
  Rat   541 -SFLRMQLLKHKKYNIVTCLHELPKTQHDLNSYVVDICVQTEKMICFSVNGVFKEVEGKSWG--- 601

  Fly   499 MELYDVRHFARTYVVVPQNN-GFCIRNETIFITNATHEQVRE 539
                .||.|.||:::.|..: ..||.|:.:.:.||...:.|:
  Rat   602 ----SVRAFTRTFILTPDRHFRLCIVNDEMILRNANPAEARK 639

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
sbrNP_524660.1 Tap-RNA_bind 113..191 CDD:462696 16/77 (21%)
leucine-rich repeat 215..255 CDD:275382 14/41 (34%)
LRR <252..>315 CDD:443914 17/62 (27%)
leucine-rich repeat 256..281 CDD:275382 5/24 (21%)
leucine-rich repeat 282..305 CDD:275382 6/22 (27%)
leucine-rich repeat 306..336 CDD:275382 8/29 (28%)
NTF2 372..531 CDD:238403 55/166 (33%)
flgK <548..>613 CDD:235895
TAP_C 609..671 CDD:197882
Nxf5XP_063136630.1 None
Blue background indicates that the domain is not in the aligned region.

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