DRSC/TRiP Functional Genomics Resources

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Protein Alignment sbr and nxf4

DIOPT Version :10

Sequence 1:NP_524660.1 Gene:sbr / 43944 FlyBaseID:FBgn0003321 Length:672 Species:Drosophila melanogaster
Sequence 2:NP_731156.1 Gene:nxf4 / 40884 FlyBaseID:FBgn0051501 Length:301 Species:Drosophila melanogaster


Alignment Length:312 Identity:75/312 - (24%)
Similarity:131/312 - (41%) Gaps:67/312 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly   102 KFGKLMPNS-FGWYQVTLQNAQIYEKE------TLLSALLAAMSPHVFIPQY------------- 146
            |.|..:|.| :|||:|.     ||..:      .:|..:...::|....|:|             
  Fly    31 KNGARLPRSIYGWYRVL-----IYSTDRRLTFNRVLRRIRCILTPLKINPRYKHTGGEQDTAEDS 90

  Fly   147 WRVERNCVIFFTDDYEAAERIQHLGKNGHLPDGYRLMPRVRSGIPLVAIDDAFKEKMKVTMAKRY 211
            |.:    ..||.|.|:.|..   |.:.|.:.:  ::..:|...:|.:.|:...:..:.:.:..||
  Fly    91 WAL----FTFFVDSYDVASA---LFRRGWVDN--QIWLKVSDRMPKIWINSILRLHLTMVLLDRY 146

  Fly   212 NIQTKALDLSRFHADPDLKQVFCPLFRQNVMGAAIDIMCDNIPDLEALNLNDNSISSMEAFKGVE 276
            :...::|||:.|:.|..|...|..|...|.|...:.|:...:|:||.|.|:.|.::::..|:.||
  Fly   147 DPVERSLDLTLFYKDKALCGEFFALAESNCMSTVLGIVDREMPELERLILDGNHLTNLWVFRKVE 211

  Fly   277 KRLPNLKILYLGDNKIPSLAHLVVLRNLSILELVLKNNPCRSRYKDSQQFISEVRRKFPKLVKLD 341
            :|.|.|..:.|..|.|.::..|..|:.|.:.||.|.:||..:.|:      .||...:|.|..|:
  Fly   212 RRFPRLHSISLKHNDIENIYSLRNLQFLPLAELNLLDNPLPAGYE------KEVLDIWPSLQVLN 270

  Fly   342 GETLEPQITFDLSEQGRLLETKASYLCDVAGAEVVRQFLD------QYFRIF 387
            ...:.|                     |.|..::|.:.|.      ::||.|
  Fly   271 KIQVTP---------------------DPAMMQLVERVLQHTGTKREFFRFF 301

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
sbrNP_524660.1 Tap-RNA_bind 113..191 CDD:462696 18/96 (19%)
leucine-rich repeat 215..255 CDD:275382 11/39 (28%)
LRR <252..>315 CDD:443914 21/62 (34%)
leucine-rich repeat 256..281 CDD:275382 9/24 (38%)
leucine-rich repeat 282..305 CDD:275382 6/22 (27%)
leucine-rich repeat 306..336 CDD:275382 8/29 (28%)
NTF2 372..531 CDD:238403 5/22 (23%)
flgK <548..>613 CDD:235895
TAP_C 609..671 CDD:197882
nxf4NP_731156.1 leucine-rich repeat 150..190 CDD:275382 11/39 (28%)
PPP1R42 <191..276 CDD:455733 28/90 (31%)
leucine-rich repeat 191..216 CDD:275382 9/24 (38%)
leucine-rich repeat 217..240 CDD:275382 6/22 (27%)
Blue background indicates that the domain is not in the aligned region.

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