DRSC/TRiP Functional Genomics Resources

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Protein Alignment sbr and nxf-2

DIOPT Version :10

Sequence 1:NP_524660.1 Gene:sbr / 43944 FlyBaseID:FBgn0003321 Length:672 Species:Drosophila melanogaster
Sequence 2:NP_506568.2 Gene:nxf-2 / 179938 WormBaseID:WBGene00003835 Length:405 Species:Caenorhabditis elegans


Alignment Length:348 Identity:79/348 - (22%)
Similarity:156/348 - (44%) Gaps:35/348 - (10%)


- Green bases have known domain annotations that are detailed below.


  Fly   218 LDLSRFHADPDLKQ---VFCPLFRQNVMGAAIDIMCDNIPDLEALNLNDNSISSMEAFKGVEKRL 279
            |:||.|..:.:..:   :.| |.:..||...:..:....|.:..::.::|.:..::....:....
 Worm    58 LNLSNFSKNTEFVERDMLMC-LTKTRVMSVVLQHIGYKYPRISGISFSNNRLCHLDHLSSLSSIS 121

  Fly   280 PNLKILYLGDNKIPSLAHLVVLRNLSILELVLKNNPCRSRYKDSQQFISEVRRKFPKLVKLDGET 344
            ..||.|.|..|:|.|...|..|..:.:..:..:.||...::....::.:.:::.|||...|||..
 Worm   122 KFLKFLDLSHNQISSGEELKKLGTIPVETVFFEGNPVCEKFVQCAEYANFIQKTFPKCSNLDGME 186

  Fly   345 LEPQITFDLSEQGRLLETKASYLCDVAGAEVVRQFLDQYFRIFDSGN----RQALLDAY------ 399
            :||:...:..||  ::..:..|........:|.:|:..|::|:|..:    |:.|||||      
 Worm   187 VEPKPDHNRIEQ--IIPFRNGYYGSDEVRTLVEEFIITYYKIYDGADGQQTRKQLLDAYDTNNST 249

  Fly   400 --HEKAML-----SISMPSASQAGRLNSFWKFNRNLRRLLNGE---ENRTRNLKYGRLACVSTLD 454
              |....|     .:..|.:      .|:..:.|....:||.|   .||...:.:|.:..|..|.
 Worm   250 FTHTVVCLWDPIKFVMYPDS------ESYRMYLRTSHNVLNQEYFAANRASRISHGAMDIVVALS 308

  Fly   455 EWPKTQHDRRTFTVDLTIYNTSMMVFTVTGLFKELNDETNNPASMELYDVRHFARTYVVVPQNNG 519
            ..|.|.|...||.||:.:.:.:::.||:.|.|:: ......|.:.|.:| .:|.||::|.|:..|
 Worm   309 RLPATIHLMDTFVVDVFLVSATLLGFTLHGTFRD-GPSAIKPENTEEHD-NYFTRTFMVAPRGEG 371

  Fly   520 -FCIRNETIFITNATHEQVREFK 541
             ..|.::.:||::.:..:..:::
 Worm   372 KVAIVSDQLFISSMSKRRGDQYR 394

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
sbrNP_524660.1 Tap-RNA_bind 113..191 CDD:462696
leucine-rich repeat 215..255 CDD:275382 8/39 (21%)
LRR <252..>315 CDD:443914 11/62 (18%)
leucine-rich repeat 256..281 CDD:275382 1/24 (4%)
leucine-rich repeat 282..305 CDD:275382 9/22 (41%)
leucine-rich repeat 306..336 CDD:275382 3/29 (10%)
NTF2 372..531 CDD:238403 47/179 (26%)
flgK <548..>613 CDD:235895
TAP_C 609..671 CDD:197882
nxf-2NP_506568.2 leucine-rich repeat 55..97 CDD:275382 8/39 (21%)
PPP1R42 <96..159 CDD:455733 13/62 (21%)
leucine-rich repeat 98..123 CDD:275382 1/24 (4%)
leucine-rich repeat 124..147 CDD:275382 9/22 (41%)
leucine-rich repeat 148..178 CDD:275382 3/29 (10%)
Blue background indicates that the domain is not in the aligned region.

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