DRSC/TRiP Functional Genomics Resources

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Protein Alignment sbr and Nxf7

DIOPT Version :9

Sequence 1:NP_524660.1 Gene:sbr / 43944 FlyBaseID:FBgn0003321 Length:672 Species:Drosophila melanogaster
Sequence 2:NP_570958.1 Gene:Nxf7 / 170722 MGIID:2159343 Length:620 Species:Mus musculus


Alignment Length:613 Identity:158/613 - (25%)
Similarity:279/613 - (45%) Gaps:97/613 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly    74 EDDDMSD---MTTAVKDRPTSRRRGSPIPRGKFGKLMPNSFGWYQVTLQNAQIYEKETLLSALLA 135
            |::.|.|   :|....|:|..|..|.....|:.|       .|::||:...:.|:|..|::::.:
Mouse    87 EEEHMEDQIHVTAQRDDKPEQREAGQFTEDGELG-------SWFKVTVPCGRKYDKTQLMNSIHS 144

  Fly   136 AMS-PHVFIPQYWRVERNCVIFFTDDYEAAERIQHLGKNGHLPDGYRLMPRVRSGIPLVAIDDAF 199
            ..| |  |.|..:..:::.:.||..|:..|..::.:....|.....::...|...:...::.:.|
Mouse   145 LCSVP--FTPVDFHCDKHRIQFFVPDFRIASALKDISYKIHNEYFQKIPIFVNPSVAPYSVQNRF 207

  Fly   200 ----KEKMKVTMAKRYNIQTKALDLSRFHADPDL--KQVFCPLFRQNVMGAAIDIMCDNIPDLEA 258
                .|::|:.|.|||::...||.|.:...||||  ..:...|..::.|.|.:.|:.:|.|.|.:
Mouse   208 TKEEMEQLKLAMRKRYDVSQHALCLKKLRFDPDLMKNNIHMILNHRSCMAATLQIIQENFPKLLS 272

  Fly   259 LNLNDNSISSMEAFKGVEKRLPNLKILYLGDNKIPSLAHLVVLRNLSILELVLKNNPCRSRYKDS 323
            |||:.|.:..:::...|.|:.|.||||.|..|.:.::..|..::.|.:.:|.|:.||..|.:.|.
Mouse   273 LNLSSNKLFQLDSLIDVVKKAPQLKILNLSKNMLRTVWELEKMKGLKLEQLWLEGNPLCSTFPDR 337

  Fly   324 QQFISEVRRKFPKLVKLDGETLEPQITFDLSEQGRLLETKASYLCDVAGAEVVR----QFLDQYF 384
            ..:|..|...||:|..|||..|......:..|:..:...|..::    |:||::    :||.:|:
Mouse   338 SSYIRAVLECFPELSYLDGRKLLLPTVMNTQERKLMKPCKDIFM----GSEVIKNQVHRFLREYY 398

  Fly   385 RIFDSGNRQALLDAYHEKAMLSISMPSASQAGRLNSFWKFNRNLRRLLNGEENRTRN--LKYGRL 447
            .::||..||.||:.||::|..|:::|.......|||.:.:.::...:.|.:|...:.  |||.:.
Mouse   399 LMYDSEERQGLLNIYHDQACFSLTIPFNPNDPDLNSMYVYFKDENDMKNFKEFHIQRQLLKYTKQ 463

  Fly   448 ACVSTLDEWPKTQHDRRTFTVDLTIYNTSMMVFTVTGLFKELNDETNNPASMELYDVRHFARTYV 512
            ..|..|..:|:|.|...:|.|::.....:|:.|:|.||||    |...|...    ||.|.|.::
Mouse   464 DIVECLRGFPQTLHAFSSFQVNICFQMETMLCFSVCGLFK----EEGTPKEC----VRAFMRIFI 520

  Fly   513 VVPQNNGFCIRNETIFITNATHEQVREFKRSQHQPAPGAMPSTSSAVTSPQAGAAAGLQGRLNAL 577
            .:..::...|.|:.:|:.|.:.|::                  :||...|...:.:..:      
Mouse   521 ALLGSSNMYIVNDQLFVRNPSSEEI------------------NSAFVIPSPTSYSNFK------ 561

  Fly   578 GVATGPVAILSGDPLAATAPVNSGSAAISTTAVAPGAQDESTKMQMIEAMSAQSQMNVIWSRKCL 642
                   .:||.:                             :.:|::|.|.||.|.:.||:|||
Mouse   562 -------LVLSQE-----------------------------QQRMVQAFSTQSGMKLEWSQKCL 590

  Fly   643 EETNWDFNHAAFVFEKLFKENKIPPEAF 670
            |:..||:..||.||..|..:.|||.|.|
Mouse   591 EDNKWDYARAAEVFTMLQTKCKIPKEFF 618

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
sbrNP_524660.1 Tap-RNA_bind 112..191 CDD:286271 16/79 (20%)
leucine-rich repeat 215..255 CDD:275382 12/41 (29%)
LRR_RI <223..341 CDD:238064 37/119 (31%)
LRR_8 256..315 CDD:290566 18/58 (31%)
LRR_4 256..298 CDD:289563 14/41 (34%)
leucine-rich repeat 256..281 CDD:275382 7/24 (29%)
leucine-rich repeat 282..305 CDD:275382 7/22 (32%)
leucine-rich repeat 306..336 CDD:275382 9/29 (31%)
NTF2 372..531 CDD:238403 48/164 (29%)
Big_3_5 <578..>614 CDD:293246 2/35 (6%)
TAP_C 609..671 CDD:197882 24/62 (39%)
Nxf7NP_570958.1 Tap-RNA_bind 119..201 CDD:370331 17/90 (19%)
leucine-rich repeat 227..269 CDD:275382 12/41 (29%)
LRR_8 269..330 CDD:338972 19/60 (32%)
leucine-rich repeat 270..295 CDD:275382 7/24 (29%)
leucine-rich repeat 296..319 CDD:275382 7/22 (32%)
leucine-rich repeat 320..350 CDD:275382 9/29 (31%)
NTF2_like 393..539 CDD:385413 45/153 (29%)
TAP_C 558..619 CDD:197882 26/103 (25%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 113 1.000 Domainoid score I6110
eggNOG 1 0.900 - - E1_KOG3763
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 269 1.000 Inparanoid score I3005
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1051093at2759
OrthoFinder 1 1.000 - - FOG0000862
OrthoInspector 1 1.000 - - otm43388
orthoMCL 1 0.900 - - OOG6_102057
Panther 1 1.100 - - O PTHR10662
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X1267
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
1211.830

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