DRSC/TRiP Functional Genomics Resources

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Protein Alignment NtR and lgc-24

DIOPT Version :9

Sequence 1:NP_651958.2 Gene:NtR / 43935 FlyBaseID:FBgn0029147 Length:585 Species:Drosophila melanogaster
Sequence 2:NP_001123110.2 Gene:lgc-24 / 6418837 WormBaseID:WBGene00045385 Length:389 Species:Caenorhabditis elegans


Alignment Length:285 Identity:56/285 - (19%)
Similarity:102/285 - (35%) Gaps:73/285 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly   211 KEETKTEKLLSHLNIQAENASMPANLS---------SISF-HFQTRSLAYEQTSSLLQTRMHMMM 265
            |..|...||.|.| .:..|.|||....         .:.| ||      .:.....:...::..:
 Worm    23 KSFTVLTKLRSDL-FKNYNGSMPVGKGEYLEATPSLEVGFIHF------IDDDHGFMSVVINAEL 80

  Fly   266 HWRDSRLVWKPEDFGSL-----ESFE-HPDLRIWKPHMNVLNGALQSMGQVLQSYELMVYAN--- 321
            .|.|.||.|.|.::..:     ::|| ..|...|.|.:.     .:|..:.....:|:.:::   
 Worm    81 TWIDERLKWNPANYSGVREIVEKTFEFRKDNNCWMPIVK-----YRSYDRRYSELDLLEFSDART 140

  Fly   322 -----GSITLYAQNLQLASWCVDSARNWPSERVTCDIELGLNGQEGQENVALIYDDQRKPIAPNE 381
                 |.|....|.: :.:.|..|...:|::...|.|.|..|     :|.     |:.:.::||.
 Worm   141 LISYKGEIKTALQTM-VTTKCQFSFGEYPNDYQNCSIMLIPN-----QNA-----DEFRFVSPNG 194

  Fly   382 HVNTPSGWSFTQMSVVL-------VENDSQRRY-NPKGMMQKMTGDVAIEFTLQRNRSFYMTVFY 438
            :.| |...:....:|.:       ||::....: |.....:::||     |.......|...:.:
 Worm   195 YCN-PKFENLEHRAVRVHDLHLMGVESNIFYTFANTYFTAEEVTG-----FEYMAKTEFRFNLMF 253

  Fly   439 ------------LPLIACQMFLILS 451
                        :|.|...||||::
 Worm   254 KRVNKLLNVKLSIPSILISMFLIIA 278

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
NtRNP_651958.2 Methyltransf_FA 90..191 CDD:289052
Neur_chan_LBD 212..429 CDD:280998 48/248 (19%)
lgc-24NP_001123110.2 LGIC_ECD 62..226 CDD:355788 34/186 (18%)
Cys-loop 160..174 CDD:349787 3/13 (23%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3645
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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