DRSC/TRiP Functional Genomics Resources

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Protein Alignment NtR and Chrna10

DIOPT Version :9

Sequence 1:NP_651958.2 Gene:NtR / 43935 FlyBaseID:FBgn0029147 Length:585 Species:Drosophila melanogaster
Sequence 2:NP_001074893.1 Gene:Chrna10 / 504186 MGIID:3609260 Length:447 Species:Mus musculus


Alignment Length:387 Identity:82/387 - (21%)
Similarity:142/387 - (36%) Gaps:73/387 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly   160 PGFKKEPLLQFIDEAPLVINYLSFSSFGSN---TARWFYDCGFDGYGSEIAPIVKEETKTEKLLS 221
            |||             |::.:|.....|:.   ..:.|.|. |..|.|.:.|:...:        
Mouse    10 PGF-------------LLLLFLPAECLGAEGRLAHKLFRDL-FANYTSALRPVADTD-------- 52

  Fly   222 HLNIQAENASMPANLSSISFHFQTRSLAYEQTSSLLQTRMHMMMHWRDSRLVWKPEDFGSLESFE 286
                |..|.::...||.|        :..::.:.:|...:.:...|.|:.|.|.|:.:|.|::..
Mouse    53 ----QTLNVTLEVTLSQI--------IDMDERNQVLTLYLWIRQEWTDAYLHWDPKAYGDLDAIR 105

  Fly   287 HPDLRIWKPHMNVLNGALQSMGQVLQSYELMVYANGSITLYAQNLQLASWCVDSARNWPSERVTC 351
            .|...:|:|.:.:.|.| .:......|..::|..:|::...|..:..:|..||.:. :|.:...|
Mouse   106 IPSSLVWRPDIVLYNKA-DTQPPASASTNVVVRHDGAVRWDAPAITRSSCRVDVSA-FPFDAQRC 168

  Fly   352 DIELGLNGQEGQENVALIYDDQRKPIAPNEHVNTPSGWSFTQMSVV-LVEN--------DSQRRY 407
            .:..|.....|.:.      |.|           |.|   |..|:. .|||        .::||.
Mouse   169 GLTFGSWTHGGHQL------DVR-----------PRG---TSASLADFVENVEWRVLGMPARRRV 213

  Fly   408 NPKGMMQKMTGDVAIEFTLQRNRSFYMTVFYLPLIACQMFLILSFVL--RSTRRSSL-ILIALLI 469
            ...|...:...||.....|:|..:.|:....||.:...:...|:|.|  .|..:.|| :.:.|.:
Mouse   214 LTYGCCSEPYPDVTFTLLLRRRAAAYVCNLLLPCVFISLLAPLAFHLPADSGEKVSLGVTVLLAL 278

  Fly   470 AAWGLMYMTRYASPHYVPPMMTAYKVIMMTTTYCYILHICIIWLDLYPPRS-KAPGWLVRVI 530
            ..:.|:..........||.:...|...|...|:...|.|.|:.|....|.: ..|.| .||:
Mouse   279 TVFQLILAESMPPAESVPLIGKYYMATMTMVTFSTALTILIMNLHYCGPNAHPVPAW-ARVL 339

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
NtRNP_651958.2 Methyltransf_FA 90..191 CDD:289052 6/33 (18%)
Neur_chan_LBD 212..429 CDD:280998 44/225 (20%)
Chrna10NP_001074893.1 LGIC_ECD 30..236 CDD:355788 51/248 (21%)
LGIC_TM_cation 239..>324 CDD:349853 20/84 (24%)
TM1 helix 239..261 CDD:349853 5/21 (24%)
Neur_chan_memb 243..437 CDD:367256 24/98 (24%)
TM2 helix 269..290 CDD:349853 4/20 (20%)
TM3 helix 300..322 CDD:349853 6/21 (29%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3645
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

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