DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment NtR and lev-8

DIOPT Version :10

Sequence 1:NP_651958.2 Gene:NtR / 43935 FlyBaseID:FBgn0029147 Length:585 Species:Drosophila melanogaster
Sequence 2:NP_509932.2 Gene:lev-8 / 191600 WormBaseID:WBGene00002975 Length:531 Species:Caenorhabditis elegans


Alignment Length:350 Identity:63/350 - (18%)
Similarity:136/350 - (38%) Gaps:59/350 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly   218 KLLSHLNIQAENASMPANLSSISFHFQ-----TRSLAYEQTSSLLQTRMHMMMHWRDSRLVWKPE 277
            :||.:|......|..|.:.:|.:...:     .|.:..::.:.:|.|.:.:.|.|.|.:|.|.|.
 Worm    31 QLLENLLTDYNKAVRPVHNASDALKVKFGANLCRLIDVDEVNQVLTTSLWLEMQWYDKKLTWNPT 95

  Fly   278 DFGSLESFEHPDLRIWKPHMNVLNGA-------LQSMGQVLQSYELMVYANGSITLYAQNLQLAS 335
            |:|.:|....|..:||.|.:.:.|.|       :.|:.:: ..:..:|:...||        ..|
 Worm    96 DWGGVEYIHIPSDQIWIPDIVLYNNADGEPHITITSLAKI-DHHGRVVWQPPSI--------YKS 151

  Fly   336 WCVDSARNWPSERVTCDIELGLNGQEGQENVALIYDDQRKPIAPNE--------------HVNTP 386
            :|..:.:.:|.:..||:::.|     |..|.....|..:.|:..::              ::...
 Worm   152 FCPINIKYFPYDWQTCEMKFG-----GWSNDGETLDLYQIPVDVDDIPQVKRQDDGVEFLYLEKG 211

  Fly   387 SGWSFTQMSVV--LVENDSQR--RYNPKGMMQKMTGDVAIEFTLQRNRSFYMTVFYLPLIACQMF 447
            .|.||...|..  |:...|.|  :..|....|:...|:.....::|...|:.....:|.:.....
 Worm   212 LGLSFYHESAEWDLLSATSSRYAQIYPGCCGQQYYIDIKYRIIIRRKAIFFTVTLTIPCMLIANV 276

  Fly   448 LILSFVLRSTRRSSLILIALLIAAWGLMYMTRYASPHYVPPMMTAYKVIMMTTTYCYI-----LH 507
            ....|::..........|::|: |:.:.|:...   ..:||...:..:|.:...:..:     :.
 Worm   277 TPFVFLILPNEHKMTYSISVLV-AFSVFYLVLI---DLIPPTSLSLSLIGIYLLFTLLMVSVSII 337

  Fly   508 ICIIWLDLYPPRSKAPG------WL 526
            :.::.:::|..::.:.|      ||
 Worm   338 LSVVTINMYRKQAFSSGMSHWQRWL 362

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
NtRNP_651958.2 Methyltransf_FA 89..191 CDD:463505
Neur_chan_LBD 212..429 CDD:460752 48/240 (20%)
lev-8NP_509932.2 LIC 10..499 CDD:455710 62/349 (18%)
LGIC_ECD 31..261 CDD:475126 49/243 (20%)
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.