DRSC/TRiP Functional Genomics Resources

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Protein Alignment NtR and Chrna4

DIOPT Version :10

Sequence 1:NP_651958.2 Gene:NtR / 43935 FlyBaseID:FBgn0029147 Length:585 Species:Drosophila melanogaster
Sequence 2:NP_056545.3 Gene:Chrna4 / 11438 MGIID:87888 Length:629 Species:Mus musculus


Alignment Length:365 Identity:78/365 - (21%)
Similarity:146/365 - (40%) Gaps:32/365 - (8%)


- Green bases have known domain annotations that are detailed below.


  Fly   213 ETKT---EKLLSHLNIQAENASMP-ANLSSISFHFQTRSLA----YEQTSSLLQTRMHMMMHWRD 269
            ||:.   |:||..|.......|.| ||:|.:.......|:|    .::.:.::.|.:.:...|.|
Mouse    33 ETRAHAEERLLKRLFSGYNKWSRPVANISDVVLVRFGLSIAQLIDVDEKNQMMTTNVWVKQEWHD 97

  Fly   270 SRLVWKPEDFGSLESFEHPDLRIWKPHMNVLNGALQSMGQVLQSYELMVYANGSITLYAQNLQLA 334
            .:|.|.|.|:.::.|...|...||:|.:.:.|.|..... |....:..::.:|.:......:..:
Mouse    98 YKLRWDPGDYENVTSIRIPSELIWRPDIVLYNNADGDFA-VTHLTKAHLFYDGRVQWTPPAIYKS 161

  Fly   335 SWCVDSARNWPSERVTCDIELGLNGQEGQENVALIYDDQR-KPIAPNEHVNTPSGWSFTQMSVVL 398
            |..:| ...:|.::..|.::.|          :..||..: ..::.:..|:....|...:..:| 
Mouse   162 SCSID-VTFFPFDQQNCTMKFG----------SWTYDKAKIDLVSMHSRVDQLDFWESGEWVIV- 214

  Fly   399 VENDSQRRYNPK--GMMQKMTGDVAIEFTLQRNRSFYMTVFYLP--LIACQMFLILSFVLRSTRR 459
               |:...||.:  ....::..|:...|.::|...||.....:|  ||:|...|:.........:
Mouse   215 ---DAVGTYNTRKYECCAEIYPDITYAFIIRRLPLFYTINLIIPCLLISCLTVLVFYLPSECGEK 276

  Fly   460 SSLILIALLIAAWGLMYMTR-YASPHYVPPMMTAYKVI-MMTTTYCYILHICIIWLDLYPPRSKA 522
            .:|.:..||.....|:.:|. ..|...|.|::..|.:. |:..|...::.:.::.:....||:..
Mouse   277 VTLCISVLLSLTVFLLLITEIIPSTSLVIPLIGEYLLFTMIFVTLSIVITVFVLNVHHRSPRTHT 341

  Fly   523 -PGWLVRVINSNVLRCILGLRFSDSTDYCDIQENPWHHMA 561
             |.|:.||....|.|.:...|.|...|.|.......|.||
Mouse   342 MPAWVRRVFLDIVPRLLFMKRPSVVKDNCRRLIESMHKMA 381

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
NtRNP_651958.2 Methyltransf_FA 89..191 CDD:463505
Neur_chan_LBD 212..429 CDD:460752 44/226 (19%)
Chrna4NP_056545.3 LGIC_ECD 39..245 CDD:475126 43/221 (19%)
Neur_chan_memb 252..620 CDD:460753 31/130 (24%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 420..459
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 503..529
Blue background indicates that the domain is not in the aligned region.

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