DRSC/TRiP Functional Genomics Resources

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Protein Alignment NtR and chrna9

DIOPT Version :9

Sequence 1:NP_651958.2 Gene:NtR / 43935 FlyBaseID:FBgn0029147 Length:585 Species:Drosophila melanogaster
Sequence 2:XP_012811629.2 Gene:chrna9 / 100493319 XenbaseID:XB-GENE-983401 Length:494 Species:Xenopus tropicalis


Alignment Length:363 Identity:78/363 - (21%)
Similarity:140/363 - (38%) Gaps:63/363 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly   184 SSFGSNTARWFYDCGFDGYGSEIAPIVKEETKTEKLLSHLNIQAENASMPANLSSISFHFQTRSL 248
            |:.|......|.|. |:.|.:.:.|:  |:|.          :|.|.|:...||.|.        
 Frog    26 SAKGKYAQMLFRDL-FEDYSNALRPV--EDTD----------KALNVSLQITLSQIK-------- 69

  Fly   249 AYEQTSSLLQTRMHMMMHWRDSRLVWKPEDFGSLESFEHPDLRIWKPHMNVLNGALQSMGQVLQS 313
            ..::.:.:|...:.:.:.|.|:.|.|..:::..|:|...|...:|:|.:.:.|.|.....:.:.:
 Frog    70 DVDERNQILTAYLWIRLSWYDAYLKWDRDEYDGLDSIRIPSNMVWRPDIVLYNKADDEFSEPVNT 134

  Fly   314 YELMVYANGSITLYAQNLQLASWCVDSARNWPSERVTCDIELGLNGQEGQENVALIYDDQRKPIA 378
            ..::.| :|.||..:..:..:| ||.....:|.:...|::..|          :..|:..:..| 
 Frog   135 NVVLRY-DGKITWDSPAITKSS-CVVDVSYFPFDNQQCNLTFG----------SWTYNGNQVDI- 186

  Fly   379 PNEHVNT-PSG----------WSFTQMSVVLVENDSQRRYNPKGMMQKMTGDVAIEFTLQRNRSF 432
                :|| .||          |....|..|       :.....|...:...|:.....|:|..||
 Frog   187 ----INTMDSGDLSDFVENVEWEMQGMPAV-------KNVITYGCCSEPYPDITFTLILKRRSSF 240

  Fly   433 YMTVFYLPLIACQMFLILSFVL--RSTRRSSL-ILIALLIAAWGLMYMTRYASPHYVPPMMTAYK 494
            |:....:|.:.......|.|.|  .|..:.|| :.:.|.:..:.|| :.....|....|::..|.
 Frog   241 YIFNLLIPCVMISFLAPLGFYLPADSGEKVSLGVTVLLALTVFQLM-VAESMPPSESVPLIGKYY 304

  Fly   495 VIMMT-TTYCYILHICIIWLDLYPPRSK-APGWLVRVI 530
            :..|| .|....|.|.|:.:.|..|.:| .|.| .|::
 Frog   305 IATMTMITASTALTIIIMNIHLCGPEAKPIPRW-ARIV 341

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
NtRNP_651958.2 Methyltransf_FA 90..191 CDD:289052 2/6 (33%)
Neur_chan_LBD 212..429 CDD:280998 42/227 (19%)
chrna9XP_012811629.2 None


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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