DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment prc and CG17104

DIOPT Version :9

Sequence 1:NP_524658.2 Gene:prc / 43930 FlyBaseID:FBgn0028573 Length:1713 Species:Drosophila melanogaster
Sequence 2:NP_001260358.1 Gene:CG17104 / 34465 FlyBaseID:FBgn0040496 Length:449 Species:Drosophila melanogaster


Alignment Length:493 Identity:93/493 - (18%)
Similarity:146/493 - (29%) Gaps:177/493 - (35%)


- Green bases have known domain annotations that are detailed below.


  Fly  1272 KTQVSGTYSSGGTFSASAMTSDADRAA-----SAQVTGNADGAVSQSQGSGGPAQSQAQVQVAKD 1331
            ||.||..|.:         |.|.|.:.     .:.:|.:.|..|..:....|.|.::|...|   
  Fly    23 KTTVSPEYEA---------TEDVDSSTYMSVEESTITVDVDSDVILTTNPEGEAFTEASPIV--- 75

  Fly  1332 GGTKASSQSGGIIQQ-----SQSEVHANDK--GGLADAQSSGPGQTSSQAQIGFRPGQEANPIAA 1389
              |........::||     :|.|...|.:  ....|:.|....||:|                 
  Fly    76 --TTEEPLPDSVVQQLEMERAQEEELKNPEKPEDDLDSDSEEEDQTTS----------------- 121

  Fly  1390 NGGGQASSSSGTHSSQSSSQIHGTSSFGVSYHGAAQSASGTKEQVATYREANRELFNTISQFG-- 1452
                       |.:.|..|::               |.|.||.   :|:            ||  
  Fly   122 -----------TSTEQPKSEV---------------SESTTKR---SYK------------FGAT 145

  Fly  1453 ---NNANAVTDRADAVYSGPALTDESDRVPEAQLKSTKPKEEAEQVVS----KLDHPEPVQYD-- 1508
               .|....|.|.:..   ..|..:....|.|:.:.|..|||.:.:.:    |..|.|.::.|  
  Fly   146 TLPPNFITTTRRVEIT---TILPQDGATTPNAETEETTVKEEVKTIRNYFERKPAHMEEIELDMA 207

  Fly  1509 -----------------------------DEDEADPDEYDEDEYYE------------EKPVKLE 1532
                                         :||:....|.|:.|..|            ..|:..|
  Fly   208 ENRMETTTNEPLHENVELSMIMTTDAALVEEDKKTGIETDQAETVETTVVPVYQYVSNAAPIVTE 272

  Fly  1533 ESPKSSTIVAPTEATPRPKTYNQSSPTQS--QQTVVVPVPGEKYQVVQKQNGKATINAEPSTTEA 1595
            ..|:|:|:|        |....:::.|:.  ::|..:|       :|.....|.|..|| .|||.
  Fly   273 PQPESTTVV--------PTVKEEAATTEGAIEETTELP-------LVLSSAFKPTSEAE-ETTET 321

  Fly  1596 IPPGFRGTV-------------NVEKKFHTKALELHAPKGVEITPDT-----SDEGPVRGDKPLR 1642
            .|.....|.             |.:.:..|.||:..:.......|.|     |.|.|.  .....
  Fly   322 APSTSTSTTETVLITTKVGTLENFQPETTTSALDTTSTTSTTEAPTTTSTTSSTEDPT--TTSTT 384

  Fly  1643 RAPDSYVTVTKSVTGSMDNTKNPPQENKNFQSTYYTKS 1680
            .||.:..|.....|.|..:|.:.|......:....|::
  Fly   385 EAPTTTSTTEAPTTTSTTSTTSAPTTTTTTERPIQTRA 422

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
prcNP_524658.2 Pericardin_rpt 159..191 CDD:284468
Pericardin_rpt 176..208 CDD:284468
Loricrin 216..534 CDD:292475
Pericardin_rpt 227..259 CDD:284468
Pericardin_rpt 244..276 CDD:284468
Pericardin_rpt 295..326 CDD:284468
Pericardin_rpt 312..344 CDD:284468
Pericardin_rpt 346..378 CDD:284468
Pericardin_rpt 363..395 CDD:284468
Pericardin_rpt 397..429 CDD:284468
Pericardin_rpt 431..463 CDD:284468
Pericardin_rpt 465..497 CDD:284468
Pericardin_rpt 482..514 CDD:284468
Pericardin_rpt 516..547 CDD:284468
Pericardin_rpt 533..565 CDD:284468
Pericardin_rpt 567..598 CDD:284468
Pericardin_rpt 584..616 CDD:284468
Pericardin_rpt 624..656 CDD:284468
Pericardin_rpt 641..673 CDD:284468
Pericardin_rpt 841..873 CDD:284468
Pericardin_rpt 893..929 CDD:284468
Glutenin_hmw 925..>1382 CDD:281191 26/121 (21%)
Pericardin_rpt 948..992 CDD:284468
Pericardin_rpt 977..1009 CDD:284468
CG17104NP_001260358.1 UPF0544 <86..139 CDD:292377 17/98 (17%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E33208_3BNT3
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
10.900

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