DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment prc and CG12480

DIOPT Version :9

Sequence 1:NP_524658.2 Gene:prc / 43930 FlyBaseID:FBgn0028573 Length:1713 Species:Drosophila melanogaster
Sequence 2:NP_572937.1 Gene:CG12480 / 32359 FlyBaseID:FBgn0030537 Length:611 Species:Drosophila melanogaster


Alignment Length:605 Identity:124/605 - (20%)
Similarity:180/605 - (29%) Gaps:178/605 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly  1002 GIGGQTGAGQPGYGAQPGFGGQLGYGNQPGVGGQTGAGQPGYGSQPGVGGQTGAGQP-------- 1058
            |:....|.|.....:.|  .......::...||.:.:.|....::...||...:.||        
  Fly    58 GLAADGGYGLTALSSAP--SSSSSSSSEVVQGGDSSSYQYSKSAEVVPGGDASSYQPAEYTPAHL 120

  Fly  1059 -GYGVIPGFGGQPGIGGQTAAGKPG-YGGQ--------PGIGGS---PVYGTQQGTGGQSGISGG 1110
             ...|:|        ||.:::.:|. |..:        ||:..|   |...|.:.......:.||
  Fly   121 KSADVVP--------GGDSSSYQPAEYTPEHLRTVDVAPGVDSSSYQPAEYTPEHLKAAEVVPGG 177

  Fly  1111 -----QPGYGTQPGQTGAGQPGYGSLPGTGGQATAGQPG-YGPGS-----QPGIGGQTVGGHGGY 1164
                 ||...| |....|.:    .:|  ||.:::.||. |.|..     ...||..|      |
  Fly   178 DSSSYQPAEYT-PEHLKAAE----VVP--GGDSSSYQPAEYTPAHLKAAVPAAIGADT------Y 229

  Fly  1165 GSQPGIGGAPVYGTQ------------------------PGGGGQTGVIGGQPGQIGDRVGQPGY 1205
            ...|...||..|..:                        |||...:    .||.:.     .|.|
  Fly   230 APVPAAIGADTYTPEKFIPQDVQEAHYKYNQEQEQGAAVPGGDSSS----YQPAEY-----TPAY 285

  Fly  1206 GTQTGQIGA--------------PGRYTDG--SQTVPGAVGTGGVVAAGTSGADDAFSQAESSIG 1254
            ..||.....              |..||..  ...||.|:|.            |.::...::||
  Fly   286 LKQTSSATVDAKVVPGGDSSSYQPAEYTPAHLKAAVPAAIGA------------DTYAPVPAAIG 338

  Fly  1255 DG---------QASASAQGKKNGGTAKTQVSGTYSSGGTFSASAMTSD--ADRAASAQVTGNADG 1308
            ..         |....|..|.|    :.|..|....||. |:|...::  .:...:|:|....|.
  Fly   339 ADTYTPEKFIPQDVQEAHYKYN----QEQEQGAAVPGGD-SSSYQPAEYTPEHLKAAEVVPGGDS 398

  Fly  1309 AVSQSQGSGGPAQSQAQVQVAKDGGTKASSQSG---------GIIQQSQSEVH-------ANDKG 1357
            : |.......||..:|.|..|....|.|...:.         ..|.|...|.|       ..::|
  Fly   399 S-SYQPAEYTPAHLKASVPAAIGADTYAPVPAAIGADTYTPEKFIPQDVQEAHYKYIQEQEQEQG 462

  Fly  1358 GLADAQSSGPGQTSSQAQIGFRPGQEANPIAANGGGQASSSSGTHSSQSSSQIHGTS-------- 1414
            .....     |.:||.....:.|.|....:.|:..  ||:.||..||...|.:..||        
  Fly   463 AAVPG-----GDSSSYQPAEYTPAQLKKSVVASTA--ASAISGADSSSYQSAVSQTSYVNSQAKT 520

  Fly  1415 ----SFGVSYHGAAQSASGTKEQVATYREAN----RELF-----NTISQFGNNANA-VTDRADAV 1465
                |...||..|...|:..:.|......||    ..|:     |.|.:|..:.:. |...||.:
  Fly   521 IVAGSSSSSYQSAQPIAAYVQGQTPVVIGANTITPAHLYEEPTSNGIEEFNPDTHVPVAIGADTI 585

  Fly  1466 YSGPALTDESDRVPEAQLKS 1485
            .........|..|.|.|..|
  Fly   586 TPAHLQASYSKSVQETQYAS 605

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
prcNP_524658.2 Pericardin_rpt 159..191 CDD:284468
Pericardin_rpt 176..208 CDD:284468
Loricrin 216..534 CDD:292475
Pericardin_rpt 227..259 CDD:284468
Pericardin_rpt 244..276 CDD:284468
Pericardin_rpt 295..326 CDD:284468
Pericardin_rpt 312..344 CDD:284468
Pericardin_rpt 346..378 CDD:284468
Pericardin_rpt 363..395 CDD:284468
Pericardin_rpt 397..429 CDD:284468
Pericardin_rpt 431..463 CDD:284468
Pericardin_rpt 465..497 CDD:284468
Pericardin_rpt 482..514 CDD:284468
Pericardin_rpt 516..547 CDD:284468
Pericardin_rpt 533..565 CDD:284468
Pericardin_rpt 567..598 CDD:284468
Pericardin_rpt 584..616 CDD:284468
Pericardin_rpt 624..656 CDD:284468
Pericardin_rpt 641..673 CDD:284468
Pericardin_rpt 841..873 CDD:284468
Pericardin_rpt 893..929 CDD:284468
Glutenin_hmw 925..>1382 CDD:281191 93/478 (19%)
Pericardin_rpt 948..992 CDD:284468
Pericardin_rpt 977..1009 CDD:284468 1/6 (17%)
CG12480NP_572937.1 PHA03247 <112..395 CDD:223021 65/329 (20%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E33208_3BNT3
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
10.900

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