| Sequence 1: | NP_524658.2 | Gene: | prc / 43930 | FlyBaseID: | FBgn0028573 | Length: | 1713 | Species: | Drosophila melanogaster |
|---|---|---|---|---|---|---|---|---|---|
| Sequence 2: | NP_445756.1 | Gene: | Col1a1 / 29393 | RGDID: | 61817 | Length: | 1453 | Species: | Rattus norvegicus |
| Alignment Length: | 1347 | Identity: | 443/1347 - (32%) |
|---|---|---|---|
| Similarity: | 532/1347 - (39%) | Gaps: | 270/1347 - (20%) |
- Green bases have known domain annotations that are detailed below.
|
Fly 5 RLGLLLGAVLFVASANGAAIENEVSSLNDLQREKRSGRGYSRGQTQSQYLNFGKPE-------ED 62
Fly 63 GKAEAEATENGSRSTVSGTHGMGQAQSQFSSGDCNGCSGYQTDYPSSGRILDASGSGGIGRPDSI 127
Fly 128 ISLPGGVGGQTGAGQAGYGSQLGVGAQAGAGQPGYGDQPGVGTQPGV----GQPGYGSQPGIGGQ 188
Fly 189 TGAGQPGYG--------SQPGIGGQTG-AGQPGYGSQPVVGAQTGTGQPGYGAQPGVGTQTG-AG 243
Fly 244 QPGYGSQPGIGGQTG-ARQPGYVTQPG----VGAQTGIGQPGYGAQPGILGQTGAGQPGYGSQPG 303
Fly 304 IGGQTG----AGQPGYGTQPGVGAQTG-TGQPGYGAQPGVGTQTGA----GQPGYGSQPGIGGQT 359
Fly 360 GAGQPGYGTQPGVGAQTGAGQPGYGAQPGVGAQTGAGQPGYGSQPGIGGQTG-AGQPGYGSQPGI 423
Fly 424 GGQTGARQPGYGSQPGV-GAQTGAGQPGYGAQPGVGAQTGAGQPGYGSQPGIGGQTGA-GQPG-Y 485
Fly 486 GSQ--PGVGAQTG----AGQPGYGAQPG-VGAQTGAGQPGYGSQPGIGGQTG-AGQPGYGTQPGV 542
Fly 543 GAQTGT----GQPGYGAQPGVGTQTGAGQPGYGSQPGIGGQTGAGQPGYGTQPGVGAQTGTGQPG 603
Fly 604 YGAQPGVGTQTGAGQPGYGSQPGYGTQPGVGAQTGT-GQPGYGAQPGVGGQTGA-GQPGYGTQPG 666
Fly 667 IGGQTG-AGQPGYGSQPGIGGQTG-GGQPGYGSQIGGQTGAGQPSYGSQPGVGAQNGAGQPG-YG 728
Fly 729 TQPVIG-----GQTGA-GQPGYGGQTGVGGSPGFLTQPGIGGISGPIGGKLGGGQSEAAKPGYWA 787
Fly 788 QPGIGGPSRYGSQP---GIGDQTG-TGQSGYGGQPGISGQTGGGQPGYGGQATISGLPGYGTQPG 848
Fly 849 IGALTAVPGGHYGYETQPGIGGQTGTNQPGFGGQPGIGGQTG-AGQPG-YGFIGQPGIGGQTGTS 911
Fly 912 GRQPGYGTQPGIGGQTAAGQPGYGSQTGVGGQIG-------AGQPG----YGSQPGIG--GQTG- 962
Fly 963 AGQPGYGAQPGFGGQPGYGNQPGVGGQTGAGQPGYGSQPGIGGQTG-AGQPGYGAQPGFGGQLGY 1026
Fly 1027 GNQPGVGGQTGA----GQPGYGSQPGVGGQTG----AGQPGYGVIPGFGGQPGIGGQTA----AG 1079
Fly 1080 KPGYGGQPGIGGSPVYGTQQGTGGQSGISGGQPGYGTQPGQTGAGQPGYGSLPGTGGQATAGQPG 1144
Fly 1145 YGPGSQPGIGGQT----VGGHGGYGSQPGIGGAPVYGTQPGGGGQTGVIG--GQPGQIGDRVGQP 1203
Fly 1204 GYGTQTGQIGAP---GRYTD-GSQTVPGAVGTGGVVAAGTSGADDAF 1246 |
| Gene | Sequence | Domain | Region | External ID | Identity |
|---|---|---|---|---|---|
| prc | NP_524658.2 | Pericardin_rpt | 159..191 | CDD:284468 | 14/35 (40%) |
| Pericardin_rpt | 176..208 | CDD:284468 | 15/40 (38%) | ||
| Loricrin | 216..534 | CDD:292475 | 122/344 (35%) | ||
| Pericardin_rpt | 227..259 | CDD:284468 | 12/33 (36%) | ||
| Pericardin_rpt | 244..276 | CDD:284468 | 13/36 (36%) | ||
| Pericardin_rpt | 295..326 | CDD:284468 | 10/34 (29%) | ||
| Pericardin_rpt | 312..344 | CDD:284468 | 10/32 (31%) | ||
| Pericardin_rpt | 346..378 | CDD:284468 | 10/31 (32%) | ||
| Pericardin_rpt | 363..395 | CDD:284468 | 10/31 (32%) | ||
| Pericardin_rpt | 397..429 | CDD:284468 | 14/32 (44%) | ||
| Pericardin_rpt | 431..463 | CDD:284468 | 10/32 (31%) | ||
| Pericardin_rpt | 465..497 | CDD:284468 | 16/39 (41%) | ||
| Pericardin_rpt | 482..514 | CDD:284468 | 13/39 (33%) | ||
| Pericardin_rpt | 516..547 | CDD:284468 | 9/31 (29%) | ||
| Pericardin_rpt | 533..565 | CDD:284468 | 10/35 (29%) | ||
| Pericardin_rpt | 567..598 | CDD:284468 | 10/30 (33%) | ||
| Pericardin_rpt | 584..616 | CDD:284468 | 9/31 (29%) | ||
| Pericardin_rpt | 624..656 | CDD:284468 | 9/32 (28%) | ||
| Pericardin_rpt | 641..673 | CDD:284468 | 12/33 (36%) | ||
| Pericardin_rpt | 841..873 | CDD:284468 | 10/31 (32%) | ||
| Pericardin_rpt | 893..929 | CDD:284468 | 10/36 (28%) | ||
| Glutenin_hmw | 925..>1382 | CDD:281191 | 122/359 (34%) | ||
| Pericardin_rpt | 948..992 | CDD:284468 | 19/50 (38%) | ||
| Pericardin_rpt | 977..1009 | CDD:284468 | 13/32 (41%) | ||
| Col1a1 | NP_445756.1 | VWC | 31..86 | CDD:214564 | 12/78 (15%) |
| Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite | 97..1206 | 416/1217 (34%) | |||
| Nonhelical region (N-terminal) | 152..167 | 4/14 (29%) | |||
| Triple-helical region | 168..1181 | 385/1122 (34%) | |||
| Collagen | 225..284 | CDD:189968 | 20/66 (30%) | ||
| Collagen | 264..316 | CDD:189968 | 17/51 (33%) | ||
| Collagen | 390..449 | CDD:189968 | 26/65 (40%) | ||
| Collagen | 486..545 | CDD:189968 | 23/74 (31%) | ||
| Collagen | 525..584 | CDD:189968 | 25/75 (33%) | ||
| Collagen | 657..714 | CDD:189968 | 23/63 (37%) | ||
| Collagen | 696..748 | CDD:189968 | 19/59 (32%) | ||
| Cell attachment site. /evidence=ECO:0000255 | 734..736 | 0/1 (0%) | |||
| Collagen | 1068..1123 | CDD:189968 | 14/56 (25%) | ||
| Cell attachment site. /evidence=ECO:0000255 | 1082..1084 | 0/1 (0%) | |||
| Major antigenic determinant (of neutral salt-extracted rat skin collagen) | 1176..1186 | 2/9 (22%) | |||
| Nonhelical region (C-terminal) | 1182..1207 | 3/8 (38%) | |||
| COLFI | 1219..1452 | CDD:279718 | |||
| Blue background indicates that the domain is not in the aligned region. | |||||
| Tool | Simple Score | Weighted Score | Original Tool Information | |||
|---|---|---|---|---|---|---|
| BLAST Result | Score | Score Type | Cluster ID | |||
| Compara | 0 | 0.000 | Not matched by this tool. | |||
| Domainoid | 0 | 0.000 | Not matched by this tool. | |||
| eggNOG | 0 | 0.000 | Not matched by this tool. | |||
| Hieranoid | 0 | 0.000 | Not matched by this tool. | |||
| Homologene | 0 | 0.000 | Not matched by this tool. | |||
| Inparanoid | 0 | 0.000 | Not matched by this tool. | |||
| OMA | 0 | 0.000 | Not matched by this tool. | |||
| OrthoDB | 0 | 0.000 | Not matched by this tool. | |||
| OrthoFinder | 0 | 0.000 | Not matched by this tool. | |||
| OrthoInspector | 0 | 0.000 | Not matched by this tool. | |||
| orthoMCL | 0 | 0.000 | Not matched by this tool. | |||
| Panther | 0 | 0.000 | Not matched by this tool. | |||
| Phylome | 0 | 0.000 | Not matched by this tool. | |||
| SonicParanoid | 0 | 0.000 | Not matched by this tool. | |||
| SwiftOrtho | 0 | 0.000 | Not matched by this tool. | |||
| TreeFam | 0 | 0.000 | Not matched by this tool. | |||
| 0 | 0.000 | |||||