DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment prc and Col1a1

DIOPT Version :9

Sequence 1:NP_524658.2 Gene:prc / 43930 FlyBaseID:FBgn0028573 Length:1713 Species:Drosophila melanogaster
Sequence 2:NP_031768.2 Gene:Col1a1 / 12842 MGIID:88467 Length:1453 Species:Mus musculus


Alignment Length:1354 Identity:444/1354 - (32%)
Similarity:530/1354 - (39%) Gaps:284/1354 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly     5 RLGLLLGAVLFVASANGAAIENEVSSLNDLQREKRSGRGYSRGQTQSQYLNFGKPE-------ED 62
            ||.|||||...:  .:|.....|||.::       :|.....|:|       .|||       .:
Mouse     8 RLLLLLGATALL--THGQEDIPEVSCIH-------NGLRVPNGET-------WKPEVCLICICHN 56

  Fly    63 GKAEAEATENGSRSTVSGTHGMGQAQSQFSSGDCNGCSGYQTDY--PSSGRILDASGSGGIGRPD 125
            |.|..:        .|.....:.....|...|:|  |:....:|  |:|.   |....|..|.|.
Mouse    57 GTAVCD--------DVQCNEELDCPNPQRREGEC--CAFCPEEYVSPNSE---DVGVEGPKGDPG 108

  Fly   126 SIISLPGGVGGQTGAGQAGYGSQLGVGAQAGAGQPGYGDQPGVGTQPGVGQPGYGSQPGIGGQTG 190
                 |.|..|..|.                .|:.|...|||:...|  |.||....||:||.. 
Mouse   109 -----PQGPRGPVGP----------------PGRDGIPGQPGLPGPP--GPPGPPGPPGLGGNF- 149

  Fly   191 AGQPGYG--------SQPGIGGQTG-AGQPGYGSQPVVGAQTGTGQPGYGAQPGVGTQTGAGQPG 246
            |.|..||        |.||..|.:| .|.||....|  |.|...|.||...:||     |:|..|
Mouse   150 ASQMSYGYDEKSAGVSVPGPMGPSGPRGLPGPPGAP--GPQGFQGPPGEPGEPG-----GSGPMG 207

  Fly   247 YGSQPGIGGQTG----ARQPGYVTQPG----VGAQTGIGQPGYGAQPGILGQTG-AGQPGYGSQP 302
            ....||..|:.|    |.:||   :||    .|.|...|.||....||:.|..| :|..|.....
Mouse   208 PRGPPGPPGKNGDDGEAGKPG---RPGERGPPGPQGARGLPGTAGLPGMKGHRGFSGLDGAKGDA 269

  Fly   303 GIGGQTG-AGQPGYGTQPGVGAQTG-TGQPGYGAQPG-VGTQTGAGQPGYGSQPGIGGQTG-AGQ 363
            |..|..| .|.||....||   |.| .|.||...:|| .||....|..|.....|..|.|| .|.
Mouse   270 GPAGPKGEPGSPGENGAPG---QMGPRGLPGERGRPGPPGTAGARGNDGAVGAAGPPGPTGPTGP 331

  Fly   364 PGYGTQPG-VGAQTGAGQPGYGAQPGVGAQTGAGQPGYGSQPGIGGQTG-AGQPGYGSQPGIGGQ 426
            ||:   || |||:..||.  .||:...|.|...|:||   .||..|..| ||.||...|||..|.
Mouse   332 PGF---PGAVGAKGEAGP--QGARGSEGPQGVRGEPG---PPGPAGAAGPAGNPGADGQPGAKGA 388

  Fly   427 TGARQPGYGSQPGV-GAQTGAGQPGYGAQPGVGAQTGAGQPGYGSQPGIGGQTGA-GQPGYGSQP 489
            .||  ||....||. ||:..:|..|....|  |.:..:|:||   .||..|.||| |:||     
Mouse   389 NGA--PGIAGAPGFPGARGPSGPQGPSGPP--GPKGNSGEPG---APGNKGDTGAKGEPG----- 441

  Fly   490 GVGAQTGAGQPGYGAQPGVGAQTGA-GQPGYGSQPGIGGQTGAGQPGYGTQPGVGAQTG-TGQPG 552
            ..|.|   |.||...:.|   :.|| |:||....||..|:.|.  ||....||.....| .|..|
Mouse   442 ATGVQ---GPPGPAGEEG---KRGARGEPGPSGLPGPPGERGG--PGSRGFPGADGVAGPKGPSG 498

  Fly   553 YGAQPG----VGTQTGAGQPGYGSQPGIGGQTGAGQPGYGTQPGVGAQTG-------TGQPGYGA 606
            ....||    .|:...||:||....||..|.||:  ||   .||...:||       .|:||...
Mouse   499 ERGAPGPAGPKGSPGEAGRPGEAGLPGAKGLTGS--PG---SPGPDGKTGPPGPAGQDGRPGPAG 558

  Fly   607 QPGVGTQTGAGQPGYGSQPGYGTQPGVGAQTG-TGQPGYGAQPGVGGQTGA-GQPGYGTQPGIGG 669
            .||...|  ||..|:....|...:||...:.| .|.||.....|..|:.|| |.||.....|..|
Mouse   559 PPGARGQ--AGVMGFPGPKGTAGEPGKAGERGLPGPPGAVGPAGKDGEAGAQGAPGPAGPAGERG 621

  Fly   670 QTG-AGQPGYGSQPGIGGQTG-GGQPGYGSQIGGQTGAGQPSYGSQPGVGAQNGAGQPG-YGTQP 731
            :.| ||.||:...||..|..| .|:|| ...:.|..||..||       ||:...|.|| .|.|.
Mouse   622 EQGPAGSPGFQGLPGPAGPPGEAGKPG-EQGVPGDLGAPGPS-------GARGERGFPGERGVQG 678

  Fly   732 VIG-----GQTGA-GQPGYGGQTGVGGSPGFLTQPGIGGISGPIGGKLGGGQSEAAKPGYWAQPG 790
            ..|     |..|| |..|..|.||..|:||....||:.|:                 ||.....|
Mouse   679 PPGPAGPRGNNGAPGNDGAKGDTGAPGAPGSQGAPGLQGM-----------------PGERGAAG 726

  Fly   791 IGGPSRYGSQPGIGDQTGTGQSGYGGQPGISGQTG----------GGQPGYGGQATISGLPGYGT 845
            :.||.        ||:...|..|..|.||..|..|          .|.||..|:|..||.||   
Mouse   727 LPGPK--------GDRGDAGPKGADGSPGKDGARGLTGPIGPPGPAGAPGDKGEAGPSGPPG--- 780

  Fly   846 QPGIGALTAVPGGHYGYETQPGIGGQTGTNQP-GFGGQPGIGGQTGA-GQPG----YGFIGQPGI 904
                      |.|..|   .||..|:.|...| ||.|.||..||.|| |:||    .|..|.||.
Mouse   781 ----------PTGARG---APGDRGEAGPPGPAGFAGPPGADGQPGAKGEPGDTGVKGDAGPPGP 832

  Fly   905 GGQTGTSGRQPGYGTQPGIGGQTAAGQPGYGSQTGVGGQIG-------AGQPG----YGSQPGIG 958
            .|..|..|.....|.....|.:.|||.||.....|..|::|       ||.||    .|.:.|.|
Mouse   833 AGPAGPPGPIGNVGAPGPKGPRGAAGPPGATGFPGAAGRVGPPGPSGNAGPPGPPGPVGKEGGKG 897

  Fly   959 --GQTG-AGQPGYGAQPGFGGQPGYGNQPGVGGQTGAGQPGYGSQPGIGGQTG-AGQPGYGAQPG 1019
              |:|| ||:||....||..|..|....||..|.  ||.||.....||.||.| .|.||...:.|
Mouse   898 PRGETGPAGRPGEVGPPGPPGPAGEKGSPGADGP--AGSPGTPGPQGIAGQRGVVGLPGQRGERG 960

  Fly  1020 FGGQLGYGNQPGVGGQTGA----GQPGYGSQPGVGGQTG----AGQPGYGVIPGFGGQPGIGGQT 1076
            |.|..|...:||..|.:|:    |.||....||:.|..|    .|.||....||..|.||..|..
Mouse   961 FPGLPGPSGEPGKQGPSGSSGERGPPGPMGPPGLAGPPGESGREGSPGAEGSPGRDGAPGAKGDR 1025

  Fly  1077 A----AGKPGYGGQPGIGGSPVYGTQQGTGGQSGISGGQPGYGTQPGQTGAGQPGYGSLPGTGGQ 1137
            .    ||.||..|.||..| ||     |..|::|          ..|:||...|. |.:...|.:
Mouse  1026 GETGPAGPPGAPGAPGAPG-PV-----GPAGKNG----------DRGETGPAGPA-GPIGPAGAR 1073

  Fly  1138 ATAGQPGYGPGSQPGIGGQT----VGGHGGYGSQPGIGGAPVYGTQPGGGGQTGVIG--GQPGQI 1196
            ..||.  .||....|..|:.    :.||.|:....|..|:|....:.|..|.:|..|  |.||..
Mouse  1074 GPAGP--QGPRGDKGETGEQGDRGIKGHRGFSGLQGPPGSPGSPGEQGPSGASGPAGPRGPPGSA 1136

  Fly  1197 GDRVGQPGYGTQTGQIGAP---GRYTD-GSQTVPGAVGTGGVVAAGTSGADDAF 1246
            |. .|:.|.....|.||.|   ||..| |....||..|..|.....:.|.|.:|
Mouse  1137 GS-PGKDGLNGLPGPIGPPGPRGRTGDSGPAGPPGPPGPPGPPGPPSGGYDFSF 1189

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
prcNP_524658.2 Pericardin_rpt 159..191 CDD:284468 12/31 (39%)
Pericardin_rpt 176..208 CDD:284468 15/40 (38%)
Loricrin 216..534 CDD:292475 122/335 (36%)
Pericardin_rpt 227..259 CDD:284468 11/35 (31%)
Pericardin_rpt 244..276 CDD:284468 12/39 (31%)
Pericardin_rpt 295..326 CDD:284468 10/31 (32%)
Pericardin_rpt 312..344 CDD:284468 13/33 (39%)
Pericardin_rpt 346..378 CDD:284468 13/33 (39%)
Pericardin_rpt 363..395 CDD:284468 13/32 (41%)
Pericardin_rpt 397..429 CDD:284468 14/32 (44%)
Pericardin_rpt 431..463 CDD:284468 10/32 (31%)
Pericardin_rpt 465..497 CDD:284468 13/32 (41%)
Pericardin_rpt 482..514 CDD:284468 8/31 (26%)
Pericardin_rpt 516..547 CDD:284468 10/30 (33%)
Pericardin_rpt 533..565 CDD:284468 10/36 (28%)
Pericardin_rpt 567..598 CDD:284468 11/30 (37%)
Pericardin_rpt 584..616 CDD:284468 12/38 (32%)
Pericardin_rpt 624..656 CDD:284468 9/32 (28%)
Pericardin_rpt 641..673 CDD:284468 12/33 (36%)
Pericardin_rpt 841..873 CDD:284468 8/31 (26%)
Pericardin_rpt 893..929 CDD:284468 11/39 (28%)
Glutenin_hmw 925..>1382 CDD:281191 121/359 (34%)
Pericardin_rpt 948..992 CDD:284468 19/50 (38%)
Pericardin_rpt 977..1009 CDD:284468 13/32 (41%)
Col1a1NP_031768.2 VWC 31..86 CDD:214564 13/78 (17%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 94..1210 418/1242 (34%)
Nonhelical region (N-terminal) 152..167 4/14 (29%)
Triple-helical region 168..1181 387/1131 (34%)
Collagen 225..284 CDD:189968 21/61 (34%)
Collagen 258..317 CDD:189968 22/61 (36%)
Collagen 486..545 CDD:189968 22/63 (35%)
Collagen 525..584 CDD:189968 22/65 (34%)
Collagen 657..714 CDD:189968 23/63 (37%)
Collagen 705..755 CDD:189968 20/74 (27%)
Cell attachment site. /evidence=ECO:0000255 734..736 0/1 (0%)
Collagen <784..822 CDD:189968 18/40 (45%)
Collagen 1068..1123 CDD:189968 14/56 (25%)
Cell attachment site. /evidence=ECO:0000255 1082..1084 0/1 (0%)
Nonhelical region (C-terminal) 1182..1207 3/8 (38%)
COLFI 1219..1452 CDD:279718
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
00.000

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