DRSC/TRiP Functional Genomics Resources

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Protein Alignment chm and SAS2

DIOPT Version :9

Sequence 1:NP_001260192.1 Gene:chm / 43928 FlyBaseID:FBgn0028387 Length:811 Species:Drosophila melanogaster
Sequence 2:NP_013846.1 Gene:SAS2 / 855157 SGDID:S000004734 Length:338 Species:Saccharomyces cerevisiae


Alignment Length:307 Identity:93/307 - (30%)
Similarity:151/307 - (49%) Gaps:44/307 - (14%)


- Green bases have known domain annotations that are detailed below.


  Fly   512 SERIEDELKDLPVG----KGIKYISMG-KYKMKVWYQSP-YPDDAAR------------------ 552
            |.:|:...|::..|    :.|:.|..| ..|...||.|. |.|...:                  
Yeast    30 SAKIKKTQKEMLYGILNERNIRQIQFGLNKKFSTWYGSAVYFDPETKRLGCSETKGQLSSVSNSQ 94

  Fly   553 --LPKMYICEFCLRYQKSETGIKRHAEKCVWRH-PPGDEIYRKGKLQVWQVDGKRYKQYCQHLCL 614
              |..:::||:|.:|...:|....|...|.::: .||...|:..:..:.:|.|.:|:.:||.|||
Yeast    95 YWLDTLFVCEYCFKYTDDQTRFVGHVASCPFQYRVPGKIKYKSPEYTIRRVKGSKYQLFCQCLCL 159

  Fly   615 LAKFFLDHKTLYYDVEPFLFYIMTLADVDGCHIVGYFSKHIPFLQEKNSFYNVSCILTLPPYQRK 679
            ..|.:||:|::|:.|:.:.|||  :.:......:|:|||.:...|:.    |::|||..|||||:
Yeast   160 FTKLYLDNKSMYFKVDHYEFYI--VYETGSTKPMGFFSKDLVSYQQN----NLACILIFPPYQRR 218

  Fly   680 GYGRLLIDFSYLLTRVEGKIGSPEKPLSDLGLISYRSYWKDVLLDYLCN---RSGNTIAIKDVSQ 741
            |.|.|||:|||.|:::||.|..||.|||..|||.|..||..:|..:|..   ...:.:.::|:|.
Yeast   219 GLGLLLIEFSYKLSQLEGVISGPEVPLSPFGLIGYLKYWSQILCWHLIEGDLAHYDKVTLEDLSI 283

  Fly   742 ETAIYSYDIVSTLQALGMMKYWKGKHIVLKKQDVLDEYEERVKRRGT 788
            .|.:...|::.||:.|..:    |::    .|..|......:|..||
Yeast   284 VTGMRVNDVILTLKHLNCI----GEN----NQIYLQSLNSWLKLHGT 322

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
chmNP_001260192.1 zf-C2HC 376..402 CDD:279824
NAT_SF 526..802 CDD:302625 89/289 (31%)
MOZ_SAS 584..766 CDD:280097 66/184 (36%)
SAS2NP_013846.1 SAS2 <31..338 CDD:227360 92/306 (30%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5027
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

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