DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment chm and kat5

DIOPT Version :9

Sequence 1:NP_001260192.1 Gene:chm / 43928 FlyBaseID:FBgn0028387 Length:811 Species:Drosophila melanogaster
Sequence 2:NP_001072274.1 Gene:kat5 / 779727 XenbaseID:XB-GENE-5820892 Length:506 Species:Xenopus tropicalis


Alignment Length:509 Identity:190/509 - (37%)
Similarity:267/509 - (52%) Gaps:100/509 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly   320 LEDDKIMISKSPAKKPAPSNLNASKSKVKREPIGISSGVLSSIKSRPVSPITQTEKKCPIEGCDS 384
            |:..||...|..||.|..:.|..                     |||.||..:..|         
 Frog    62 LDLKKIQFPKKEAKTPTKNGLPG---------------------SRPSSPEREVRK--------- 96

  Fly   385 SGHLSGNLDKHFLPEACPIYHNMSASECKERANERKLRNEQRLKMPVNIVT----APGNQNTNLK 445
                        :||..|      .......|..:.|...:|   .|:||:    .|....|...
 Frog    97 ------------IPELIP------PPVVPPAAGGKSLPVPKR---KVDIVSPATPVPPPPETTQV 140

  Fly   446 TLSPEQRE-----------FLAKIRESRANFKPA-------NNNFLDSKVKLEKDVTDEDREPNL 492
            |:.|:|..           .|::....|....||       .:|.|.:         |||.:.:.
 Frog   141 TVFPQQAPCDVAGVSAHTVMLSQNGAVRRPSAPAVQPGRKRKSNCLSA---------DEDSQDSS 196

  Fly   493 AGLVPDYDLQLFREAQAQASERIEDELKDLPVGKGIKYISMGKYKMKVWYQSPYPDDAARLPKMY 557
            .| :|...    |...:..|:|..|::  :...|.|:.|.:|::::|.||.||||.:...||.:|
 Frog   197 DG-IPSAP----RMTGSLVSDRSHDDI--ITRMKNIECIELGRHRLKPWYFSPYPQELTVLPVLY 254

  Fly   558 ICEFCLRYQKSETGIKRHAEKCVWRHPPGDEIYRKGKLQVWQVDGKRYKQYCQHLCLLAKFFLDH 622
            :|||||:|.||...::||..||..|||||:||||||.:..:::||::.|.|.|:||||||.||||
 Frog   255 LCEFCLKYVKSLKCLQRHLTKCNLRHPPGNEIYRKGTISFFEIDGRKNKSYSQNLCLLAKCFLDH 319

  Fly   623 KTLYYDVEPFLFYIMTLADVDGCHIVGYFSKHIPFLQEKNSFYNVSCILTLPPYQRKGYGRLLID 687
            ||||||.:||||||||..|..|.||||||||.    :|....|||:||||||||||:|||:|||:
 Frog   320 KTLYYDTDPFLFYIMTEYDCKGFHIVGYFSKE----KESTEDYNVACILTLPPYQRRGYGKLLIE 380

  Fly   688 FSYLLTRVEGKIGSPEKPLSDLGLISYRSYWKDVLLDYLCNRSGNT-----IAIKDVSQETAIYS 747
            |||.|::||||.|:||||||||||:||||||...:|:.|......|     |.|.::|:.|:|..
 Frog   381 FSYELSKVEGKTGTPEKPLSDLGLLSYRSYWSQTILEILMELKTETGERPQITINEISEITSIKK 445

  Fly   748 YDIVSTLQALGMMKYWKGKHIVLKKQDVLDEYEERVKRRGTFPKIDDSCLRWQP 801
            .|::||||.|.::.|:||::|:...:|:::.:|:.:::|  ..:||..||.:.|
 Frog   446 EDVISTLQYLNLINYYKGQYILTLSEDIVEGHEKAMQKR--VLRIDSKCLHFTP 497

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
chmNP_001260192.1 zf-C2HC 376..402 CDD:279824 2/25 (8%)
NAT_SF 526..802 CDD:302625 147/281 (52%)
MOZ_SAS 584..766 CDD:280097 109/186 (59%)
kat5NP_001072274.1 Tudor-knot 6..64 CDD:371690 1/1 (100%)
PLN00104 42..497 CDD:215056 189/507 (37%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D285390at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.010

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