DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment chm and Samd1

DIOPT Version :9

Sequence 1:NP_001260192.1 Gene:chm / 43928 FlyBaseID:FBgn0028387 Length:811 Species:Drosophila melanogaster
Sequence 2:NP_001074884.1 Gene:Samd1 / 666704 MGIID:2142433 Length:519 Species:Mus musculus


Alignment Length:486 Identity:88/486 - (18%)
Similarity:154/486 - (31%) Gaps:160/486 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly    11 ESGSSSTSGSTSSETGSSS-------DTDSSSATPEEKPS----------------TNSSAKSQT 52
            |:.:::|:.:.:|.:.:|.       ||..|..:.:.:|.                ..:.|:.:.
Mouse    11 ETAAAATTAAAASSSAASPHYQEWILDTIDSLRSRKARPDLERICRMVRRRHGPEPERTRAELEK 75

  Fly    53 QTQQQT----------NSGNAQRRKP------------VPAASEDKPKPSVAPSSKKVNNPPKSK 95
            ..||:.          :..||.|.:|            ||......|.|:.||....|..|.::.
Mouse    76 LIQQRAVLRVSYKGSISYRNAARVQPPRRGATPPAPPRVPRGGPAAPPPTPAPPPAPVAAPTRAP 140

  Fly    96 LSSDDDEYEDSAP----PAKKNSRAMGSSTVTAAAAASAA----------RRKPPASV---NKPS 143
            .::     ..:||    ||:...||..::.:.|...|.||          ||.||.:|   ..|:
Mouse   141 RAA-----AATAPPSPGPAQPGPRAQRAAPLAAPPPAPAAPPAAAPPAGPRRAPPPAVAAREPPA 200

  Fly   144 NPANKPSNPTQRSANNNTNRSLENGEGKRPSLSSSSNSTDDSMKIVK--------NGRKVPLKMA 200
            .|..:...|.|.........:...|..:..||          .::|:        :||....::.
Mouse   201 PPQQQQPPPPQPQPPPEGGAARAGGPARPVSL----------REVVRYLGGSGGASGRLTRGRVQ 255

  Fly   201 STVRPKQIRGK----------LPPAKKNGGGPVISSDGSSGSESGSNSGDESSSGSESEGSDSSN 255
            ..:..:..||:          ||...:.|..|..:|..::.|:.|   |:|.....|.|..|   
Mouse   256 GLLEEEAARGRLERTRLGALALPRGDRPGRAPPAASARAARSKRG---GEERVFEKEEEDED--- 314

  Fly   256 SYSSQPVKGGAKGKRSGPTKIQNSDSEEERKDKANPMRKLTRS----------LSMRRTKQQPKQ 310
                                   .|.|||.:|..:...::..|          ::..|..|..|:
Mouse   315 -----------------------EDEEEEEEDNVSEGSEVPESDRPAGAQHHQINGERGPQSAKE 356

  Fly   311 ETDSESD-GDLEDDKIMISKSPAKKPAPSNLNAS---KSKVKREPIGISSGVLSSIKSRPVSPIT 371
            .....|. |..:      .:...:.|||.:....   .:.|.:|.   .|..:.:....| ||:.
Mouse   357 RVKEWSPCGPYQ------GQDEGRGPAPGSCTRQVFPMTAVNKEG---GSACVGAAPDSP-SPVP 411

  Fly   372 QTEKKCPIEGCDSSGHLSGNLDKHFLPEACP 402
            ....|..:.|.|.:            |..||
Mouse   412 LPPGKPALPGADGT------------PFGCP 430

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
chmNP_001260192.1 zf-C2HC 376..402 CDD:279824 4/25 (16%)
NAT_SF 526..802 CDD:302625
MOZ_SAS 584..766 CDD:280097
Samd1NP_001074884.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..30 4/18 (22%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 87..232 32/149 (21%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 261..381 28/154 (18%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 417..439 5/26 (19%)
SAM_Atherin-like 440..508 CDD:188982
SAM 440..506 CDD:197735
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5027
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

Return to query results.
Submit another query.