DRSC/TRiP Functional Genomics Resources

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Protein Alignment chm and Samd1

DIOPT Version :10

Sequence 1:NP_609117.4 Gene:chm / 43928 FlyBaseID:FBgn0028387 Length:811 Species:Drosophila melanogaster
Sequence 2:NP_001074884.1 Gene:Samd1 / 666704 MGIID:2142433 Length:519 Species:Mus musculus


Alignment Length:486 Identity:88/486 - (18%)
Similarity:154/486 - (31%) Gaps:160/486 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly    11 ESGSSSTSGSTSSETGSSS-------DTDSSSATPEEKPS----------------TNSSAKSQT 52
            |:.:::|:.:.:|.:.:|.       ||..|..:.:.:|.                ..:.|:.:.
Mouse    11 ETAAAATTAAAASSSAASPHYQEWILDTIDSLRSRKARPDLERICRMVRRRHGPEPERTRAELEK 75

  Fly    53 QTQQQT----------NSGNAQRRKP------------VPAASEDKPKPSVAPSSKKVNNPPKSK 95
            ..||:.          :..||.|.:|            ||......|.|:.||....|..|.::.
Mouse    76 LIQQRAVLRVSYKGSISYRNAARVQPPRRGATPPAPPRVPRGGPAAPPPTPAPPPAPVAAPTRAP 140

  Fly    96 LSSDDDEYEDSAP----PAKKNSRAMGSSTVTAAAAASAA----------RRKPPASV---NKPS 143
            .::     ..:||    ||:...||..::.:.|...|.||          ||.||.:|   ..|:
Mouse   141 RAA-----AATAPPSPGPAQPGPRAQRAAPLAAPPPAPAAPPAAAPPAGPRRAPPPAVAAREPPA 200

  Fly   144 NPANKPSNPTQRSANNNTNRSLENGEGKRPSLSSSSNSTDDSMKIVK--------NGRKVPLKMA 200
            .|..:...|.|.........:...|..:..||          .::|:        :||....::.
Mouse   201 PPQQQQPPPPQPQPPPEGGAARAGGPARPVSL----------REVVRYLGGSGGASGRLTRGRVQ 255

  Fly   201 STVRPKQIRGK----------LPPAKKNGGGPVISSDGSSGSESGSNSGDESSSGSESEGSDSSN 255
            ..:..:..||:          ||...:.|..|..:|..::.|:.|   |:|.....|.|..|   
Mouse   256 GLLEEEAARGRLERTRLGALALPRGDRPGRAPPAASARAARSKRG---GEERVFEKEEEDED--- 314

  Fly   256 SYSSQPVKGGAKGKRSGPTKIQNSDSEEERKDKANPMRKLTRS----------LSMRRTKQQPKQ 310
                                   .|.|||.:|..:...::..|          ::..|..|..|:
Mouse   315 -----------------------EDEEEEEEDNVSEGSEVPESDRPAGAQHHQINGERGPQSAKE 356

  Fly   311 ETDSESD-GDLEDDKIMISKSPAKKPAPSNLNAS---KSKVKREPIGISSGVLSSIKSRPVSPIT 371
            .....|. |..:      .:...:.|||.:....   .:.|.:|.   .|..:.:....| ||:.
Mouse   357 RVKEWSPCGPYQ------GQDEGRGPAPGSCTRQVFPMTAVNKEG---GSACVGAAPDSP-SPVP 411

  Fly   372 QTEKKCPIEGCDSSGHLSGNLDKHFLPEACP 402
            ....|..:.|.|.:            |..||
Mouse   412 LPPGKPALPGADGT------------PFGCP 430

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
chmNP_609117.4 zf-C2HC 376..404 CDD:460240 6/27 (22%)
PLN00104 <470..802 CDD:215056
Samd1NP_001074884.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..30 4/18 (22%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 87..232 32/149 (21%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 261..381 28/154 (18%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 417..439 5/26 (19%)
SAM_Atherin-like 440..508 CDD:188982
Blue background indicates that the domain is not in the aligned region.

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