DRSC/TRiP Functional Genomics Resources

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Protein Alignment chm and e(y)3

DIOPT Version :9

Sequence 1:NP_001260192.1 Gene:chm / 43928 FlyBaseID:FBgn0028387 Length:811 Species:Drosophila melanogaster
Sequence 2:NP_001259719.1 Gene:e(y)3 / 32965 FlyBaseID:FBgn0087008 Length:2012 Species:Drosophila melanogaster


Alignment Length:637 Identity:128/637 - (20%)
Similarity:221/637 - (34%) Gaps:183/637 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly     2 ALESGSSSSESGSSSTSGSTSSETGSSSDTDS--SSATPEEKPSTNSSAKSQTQTQQQTNSGNAQ 64
            |:||.:::|.:||:..:|...|...::|:..|  :|:|.||:... ||..|..|..||.|:...:
  Fly    23 AVESAAATSTAGSAGAAGRPQSNCSANSNAKSVAASSTSEEEQRV-SSTSSPAQRDQQLNADRDR 86

  Fly    65 RRKPVPAASEDK--------------------PKPSVAPSSKKVNNPPKSK-LSSDDDEYEDSAP 108
            .::|.|...:.:                    |.|::.|.:...::.|.:. .|:........||
  Fly    87 EQEPEPQQQQQREEALQHQHNQPGHITSTTASPPPTLPPPTTPCDDAPSTTGASASASSASGEAP 151

  Fly   109 PAKKNSRAMGSSTVTAAAAASAARRKPPASVNKPSNPANKPSNPTQRSANNNTNRSLENGEGKR- 172
            .|...:.|.|......|....:..|.....:.|.|    |.:||     |:|.|.|...|:.:| 
  Fly   152 SAASAAGAAGGPMAATALEVESEERDGHKIILKLS----KHANP-----NSNANESQPGGDERRV 207

  Fly   173 --------------------------PSLSSSSNSTDDSMKIVKNGR---------KVPLKMAS- 201
                                      .:.|.||:..:|.:......:         |:.::.|: 
  Fly   208 EPLRIQLPCGGAEGGLVAKQQDAFDADASSCSSSCAEDEVATTLGQQLRNTPHIVPKLTIRAANE 272

  Fly   202 ----TVRPKQIRGKLPPAKKNGGGPVISSDGSSGSESGSNSGDES----------------SSGS 246
                :|.|| :..|||......|     |:.:|||.|.:.||.:|                |:.|
  Fly   273 RRVGSVVPK-LTIKLPENPAASG-----SNSNSGSCSAAVSGAQSAMPAKNDAHLSSLSPASASS 331

  Fly   247 ESEGSDSSNSYSSQPVKGGAKGKRSGPTKIQNS---DSEEERKDKANPMRKLT------------ 296
            .|..|.||:|.||...:.....|....|.:..|   .|.||...:...:.|||            
  Fly   332 SSASSSSSSSSSSSLAEMQTVPKLMIKTTLAGSSCISSSEELPQQQQQIPKLTIKTGGGGQEHVH 396

  Fly   297 ---RSLSMRRTKQQPKQETDSESDGDLEDD---KIMISKSPAKKPAPSNLNASKSKVK-----RE 350
               .:..:...:..||....::|...:||:   |:.....|..|....||.:.|.||:     :.
  Fly   397 TVIMTHDLNNAQSIPKLTIKTKSIEMIEDEQAAKLEQQLQPLPKLTIKNLCSPKHKVRAVLEEKP 461

  Fly   351 PIGISSGVLSSIKSRPV-SPIT-------QTEKKCPIEGCD------SSGHLSGNLDKHFLPEAC 401
            |...|...:......|. :|:|       .:::.|.....|      :|..:..|.|...:.::.
  Fly   462 PTAASKLAIPKPTPNPTPAPMTNGGESNSSSQEFCGFSDPDADIAAPASDDVRRNSDDMVIDDSL 526

  Fly   402 ------PIYHN---MSASECKERANERKLRNEQRLKMPVNIV--------TAPGNQNTNLKTLSP 449
                  .|:||   |.||........:..:..:..:...|:|        .:||:..|::     
  Fly   527 SKEHDPKIFHNLPPMPASNGIASGGSKASKASKSAQSQHNVVDMVDLTSSPSPGSSPTHV----- 586

  Fly   450 EQREFLAKI---------------------RESRANFKPA---NNNFLDSKV 477
             ...|..:|                     .|:.:..:||   |:|.|.|::
  Fly   587 -PNNFTGRISPKGLLIDCLRMQTAIGCYVPEEADSRVRPAASPNSNILLSQL 637

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
chmNP_001260192.1 zf-C2HC 376..402 CDD:279824 5/37 (14%)
NAT_SF 526..802 CDD:302625
MOZ_SAS 584..766 CDD:280097
e(y)3NP_001259719.1 PHD_SF 1700..1754 CDD:304600
RanBP2-type Zn finger 1700..1725 CDD:275375
RanBP2-type Zn finger 1749..1775 CDD:275375
PHD2_PHF10 1756..1799 CDD:277004
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45463877
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
10.930

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