DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment chm and Tip60

DIOPT Version :9

Sequence 1:NP_001260192.1 Gene:chm / 43928 FlyBaseID:FBgn0028387 Length:811 Species:Drosophila melanogaster
Sequence 2:NP_001259234.1 Gene:Tip60 / 31362 FlyBaseID:FBgn0026080 Length:541 Species:Drosophila melanogaster


Alignment Length:482 Identity:176/482 - (36%)
Similarity:262/482 - (54%) Gaps:73/482 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly   353 GISSGV--------LSSIKSRPVSP----------ITQTEKKCPIEGCDSSGHLSGNLDKHFLPE 399
            |.|:||        |:...|||.||          |.||.     .|...|......:.....|.
  Fly    92 GTSTGVTTPQRHHSLAGSVSRPTSPQHPGSGALAAIPQTP-----TGASGSVPPPAGIPNSVAPP 151

  Fly   400 ACP------IYHNMSASECKERANERKLRNEQRLKMPVNIVTAPGNQNTNLKTLSPEQREFLAKI 458
            ..|      :..|..|:..::|.| ||.:|.            .|:.:.:....|.:|:......
  Fly   152 GTPSSGGELVNGNNLAAALQKRIN-RKRKNH------------GGSAHGHHSLTSQQQQSHPHPT 203

  Fly   459 RESRANFKPAN---NNFLDSKVKLEKDVTDEDREPNLAGLVPDYDLQLFREAQAQASERIEDELK 520
            ........|.:   :..:......:.|.:.:.:.|     .|       |::.:..:.: :|.:.
  Fly   204 TPQTPTATPVHVTGDGLISGAANDDGDGSQDGKTP-----TP-------RQSGSMVTHQ-DDVVT 255

  Fly   521 DLPVGKGIKYISMGKYKMKVWYQSPYPDDAARLPKMYICEFCLRYQKSETGIKRHAEKCVWRHPP 585
            .:   |.::.|.:|::::|.||.||||.:..::|.:|||||||:|:||...::||..||..||||
  Fly   256 RM---KNVEMIELGRHRIKPWYFSPYPQELCQMPCIYICEFCLKYRKSRKCLERHLSKCNLRHPP 317

  Fly   586 GDEIYRKGKLQVWQVDGKRYKQYCQHLCLLAKFFLDHKTLYYDVEPFLFYIMTLADVDGCHIVGY 650
            |:|||||..:..:::||::.|.|.|:||||||.||||||||||.:|||||:||..|..|.|||||
  Fly   318 GNEIYRKHTISFFEIDGRKNKVYAQNLCLLAKLFLDHKTLYYDTDPFLFYVMTEFDSRGFHIVGY 382

  Fly   651 FSKHIPFLQEKNSFYNVSCILTLPPYQRKGYGRLLIDFSYLLTRVEGKIGSPEKPLSDLGLISYR 715
            |||.    :|....|||:||||:|||||||||:|||:|||.|::.|||.||||||||||||:|||
  Fly   383 FSKE----KESTEDYNVACILTMPPYQRKGYGKLLIEFSYELSKFEGKTGSPEKPLSDLGLLSYR 443

  Fly   716 SYWKDVLLDYLCNRSGN------TIAIKDVSQETAIYSYDIVSTLQALGMMKYWKGKHIVLKKQD 774
            |||...:|:...:::.:      ||.|.|:.:.|:|...|::||||.|.::.|:||::||...:.
  Fly   444 SYWAQTILEIFISQNPSTDGEKPTITINDICECTSIKKEDVISTLQNLNLINYYKGQYIVCINRV 508

  Fly   775 VLDEYEERVKRRGTFPKIDDSCLRWQP 801
            :::::...:.:|..  :||..||.|.|
  Fly   509 IIEQHRRAMDKRKI--RIDSKCLHWTP 533

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
chmNP_001260192.1 zf-C2HC 376..402 CDD:279824 3/25 (12%)
NAT_SF 526..802 CDD:302625 143/282 (51%)
MOZ_SAS 584..766 CDD:280097 106/187 (57%)
Tip60NP_001259234.1 Tudor-knot 23..78 CDD:288553
Drf_FH1 84..>157 CDD:283903 17/69 (25%)
PHA01732 139..>196 CDD:222828 11/69 (16%)
NAT_SF 254..533 CDD:302625 142/287 (49%)
MOZ_SAS 316..500 CDD:280097 106/187 (57%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45466375
Domainoid 1 1.000 62 1.000 Domainoid score I2487
eggNOG 1 0.900 - - E1_COG5027
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D285390at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR10615
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
65.850

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