DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment chm and Tip60

DIOPT Version :10

Sequence 1:NP_609117.4 Gene:chm / 43928 FlyBaseID:FBgn0028387 Length:811 Species:Drosophila melanogaster
Sequence 2:NP_572151.1 Gene:Tip60 / 31362 FlyBaseID:FBgn0026080 Length:541 Species:Drosophila melanogaster


Alignment Length:482 Identity:176/482 - (36%)
Similarity:262/482 - (54%) Gaps:73/482 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly   353 GISSGV--------LSSIKSRPVSP----------ITQTEKKCPIEGCDSSGHLSGNLDKHFLPE 399
            |.|:||        |:...|||.||          |.||.     .|...|......:.....|.
  Fly    92 GTSTGVTTPQRHHSLAGSVSRPTSPQHPGSGALAAIPQTP-----TGASGSVPPPAGIPNSVAPP 151

  Fly   400 ACP------IYHNMSASECKERANERKLRNEQRLKMPVNIVTAPGNQNTNLKTLSPEQREFLAKI 458
            ..|      :..|..|:..::|.| ||.:|.            .|:.:.:....|.:|:......
  Fly   152 GTPSSGGELVNGNNLAAALQKRIN-RKRKNH------------GGSAHGHHSLTSQQQQSHPHPT 203

  Fly   459 RESRANFKPAN---NNFLDSKVKLEKDVTDEDREPNLAGLVPDYDLQLFREAQAQASERIEDELK 520
            ........|.:   :..:......:.|.:.:.:.|     .|       |::.:..:.: :|.:.
  Fly   204 TPQTPTATPVHVTGDGLISGAANDDGDGSQDGKTP-----TP-------RQSGSMVTHQ-DDVVT 255

  Fly   521 DLPVGKGIKYISMGKYKMKVWYQSPYPDDAARLPKMYICEFCLRYQKSETGIKRHAEKCVWRHPP 585
            .:   |.::.|.:|::::|.||.||||.:..::|.:|||||||:|:||...::||..||..||||
  Fly   256 RM---KNVEMIELGRHRIKPWYFSPYPQELCQMPCIYICEFCLKYRKSRKCLERHLSKCNLRHPP 317

  Fly   586 GDEIYRKGKLQVWQVDGKRYKQYCQHLCLLAKFFLDHKTLYYDVEPFLFYIMTLADVDGCHIVGY 650
            |:|||||..:..:::||::.|.|.|:||||||.||||||||||.:|||||:||..|..|.|||||
  Fly   318 GNEIYRKHTISFFEIDGRKNKVYAQNLCLLAKLFLDHKTLYYDTDPFLFYVMTEFDSRGFHIVGY 382

  Fly   651 FSKHIPFLQEKNSFYNVSCILTLPPYQRKGYGRLLIDFSYLLTRVEGKIGSPEKPLSDLGLISYR 715
            |||.    :|....|||:||||:|||||||||:|||:|||.|::.|||.||||||||||||:|||
  Fly   383 FSKE----KESTEDYNVACILTMPPYQRKGYGKLLIEFSYELSKFEGKTGSPEKPLSDLGLLSYR 443

  Fly   716 SYWKDVLLDYLCNRSGN------TIAIKDVSQETAIYSYDIVSTLQALGMMKYWKGKHIVLKKQD 774
            |||...:|:...:::.:      ||.|.|:.:.|:|...|::||||.|.::.|:||::||...:.
  Fly   444 SYWAQTILEIFISQNPSTDGEKPTITINDICECTSIKKEDVISTLQNLNLINYYKGQYIVCINRV 508

  Fly   775 VLDEYEERVKRRGTFPKIDDSCLRWQP 801
            :::::...:.:|..  :||..||.|.|
  Fly   509 IIEQHRRAMDKRKI--RIDSKCLHWTP 533

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
chmNP_609117.4 zf-C2HC 376..404 CDD:460240 4/33 (12%)
PLN00104 <470..802 CDD:215056 148/338 (44%)
Tip60NP_572151.1 CBD_TIP60_like 27..90 CDD:350848
PLN00104 <255..533 CDD:215056 142/286 (50%)
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.